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Phyhipl phytanoyl-CoA 2-hydroxylase interacting protein-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 309901, updated on 2-Nov-2024

Summary

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Official Symbol
Phyhiplprovided by RGD
Official Full Name
phytanoyl-CoA 2-hydroxylase interacting protein-likeprovided by RGD
Primary source
RGD:1307967
See related
EnsemblRapid:ENSRNOG00000000274 AllianceGenome:RGD:1307967
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be active in cytoplasm. Orthologous to human PHYHIPL (phytanoyl-CoA 2-hydroxylase interacting protein like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 326.9), Brain (RPKM 178.4) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Phyhipl in Genome Data Viewer
Location:
20p11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (18023831..18064903)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (18024744..18065822)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (19318090..19359063)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS19-like Neighboring gene uncharacterized LOC120098901 Neighboring gene uncharacterized LOC134483897 Neighboring gene uncharacterized LOC120098903 Neighboring gene family with sequence similarity 13, member C Neighboring gene uncharacterized LOC120098904 Neighboring gene uncharacterized LOC120098902

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
phytanoyl-CoA hydroxylase-interacting protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012076.2 → NP_001012076.1  phytanoyl-CoA hydroxylase-interacting protein-like isoform 1

    See identical proteins and their annotated locations for NP_001012076.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    A6JKQ2
    Related
    ENSRNOP00000054955.2, ENSRNOT00000058151.4
    Conserved Domains (1) summary
    cd00063
    Location:7 → 112
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. NM_001398984.1 → NP_001385913.1  phytanoyl-CoA hydroxylase-interacting protein-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/Swiss-Prot
    Q6AYN4
    UniProtKB/TrEMBL
    A6JKQ4
    Related
    ENSRNOP00000089889.1, ENSRNOT00000105062.2
    Conserved Domains (1) summary
    cd00063
    Location:52 → 157
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    18023831..18064903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279186.1 → XP_063135256.1  phytanoyl-CoA hydroxylase-interacting protein-like isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AYN4.2 GenPept UniProtKB/Swiss-Prot:Q6AYN4

Gene LinkOut

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