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Ccdc178 coiled-coil domain containing 178 [ Rattus norvegicus (Norway rat) ]

Gene ID: 307556, updated on 2-Nov-2024

Summary

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Symbol
Ccdc178provided by RGD
Full Name
coiled-coil domain containing 178provided by RGD
Primary source
RGD:1308160
See related
EnsemblRapid:ENSRNOG00000022156 AllianceGenome:RGD:1308160
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308160
Summary
Predicted to be located in ciliary basal body. Orthologous to human CCDC178 (coiled-coil domain containing 178). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 40.9) See more
Orthologs
human mouse all
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Genomic context

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See Ccdc178 in Genome Data Viewer
Location:
18p12
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (13349795..13747083, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (13074834..13472732, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (12796155..13199923, complement)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene RIKEN cDNA 4930426D05 gene like Neighboring gene kelch-like family member 14 Neighboring gene uncharacterized LOC134482977 Neighboring gene ASXL transcriptional regulator 3 Neighboring gene small ribosomal subunit protein eS27-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain containing 178; coiled-coil domain-containing protein 178

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    13349795..13747083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017601075.3 → XP_017456564.1  coiled-coil domain-containing protein 178

    UniProtKB/TrEMBL
    F1M3U7
    Related
    ENSRNOP00000042594.6, ENSRNOT00000050933.7
Nucleotide Protein Strain
Heading Accession and Version

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Chemical Information
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Research Materials