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Cyyr1 cysteine and tyrosine rich 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 304138, updated on 2-Nov-2024

Summary

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Official Symbol
Cyyr1provided by RGD
Official Full Name
cysteine and tyrosine rich 1provided by RGD
Primary source
RGD:1359578
See related
AllianceGenome:RGD:1359578
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. Orthologous to human CYYR1 (cysteine and tyrosine rich 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 900.5), Heart (RPKM 178.9) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cyyr1 in Genome Data Viewer
Location:
11q11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (38044003..38150391, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (24557620..24664007, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (24967936..25078740, complement)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene ATP synthase peripheral stalk subunit F6 Neighboring gene GA binding protein transcription factor subunit alpha Neighboring gene uncharacterized LOC134480962 Neighboring gene amyloid beta precursor protein Neighboring gene U6 spliceosomal RNA Neighboring gene nascent polypeptide associated complex subunit alpha, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cysteine and tyrosine-rich protein 1
Names
cysteine/tyrosine-rich 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013980.1 → NP_001014002.1  cysteine and tyrosine-rich protein 1 precursor

    See identical proteins and their annotated locations for NP_001014002.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087052
    UniProtKB/Swiss-Prot
    Q5PQS5
    UniProtKB/TrEMBL
    A6JL64
    Conserved Domains (1) summary
    pfam10873
    Location:7 → 154
    DUF2668; Protein of unknown function (DUF2668)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    38044003..38150391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270601.1 → XP_063126671.1  cysteine and tyrosine-rich protein 1 isoform X2

  2. XM_039088443.2 → XP_038944371.1  cysteine and tyrosine-rich protein 1 isoform X1

    Conserved Domains (1) summary
    pfam10873
    Location:7 → 59
    CYYR1; Cysteine and tyrosine-rich protein 1

RNA

  1. XR_010055961.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5PQS5.1 GenPept UniProtKB/Swiss-Prot:Q5PQS5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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