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Tmem104 transmembrane protein 104 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303670, updated on 2-Nov-2024

Summary

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Official Symbol
Tmem104provided by RGD
Official Full Name
transmembrane protein 104provided by RGD
Primary source
RGD:1307953
See related
EnsemblRapid:ENSRNOG00000025669 AllianceGenome:RGD:1307953
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307953
Summary
Predicted to be located in membrane. Orthologous to human TMEM104 (transmembrane protein 104). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 33.6), Adrenal (RPKM 26.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem104 in Genome Data Viewer
Location:
10q32.1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (100926219..100984870)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (100427244..100485890)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (103737162..103795751)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene RAB37, member RAS oncogene family Neighboring gene Cd300 molecule-like family member F Neighboring gene NHERF family PDZ scaffold protein 1 Neighboring gene N-acetyltransferase 9 Neighboring gene uncharacterized LOC134480900 Neighboring gene glutamate ionotropic receptor NMDA type subunit 2C Neighboring gene ferredoxin reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 104

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191655.1 → NP_001178584.1  transmembrane protein 104

    See identical proteins and their annotated locations for NP_001178584.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A0A8I6A1J9, D3ZU40
    Related
    ENSRNOP00000051915.2, ENSRNOT00000055037.5
    Conserved Domains (2) summary
    COG0814
    Location:21 → 487
    SdaC; Amino acid permease [Amino acid transport and metabolism]
    cl00456
    Location:25 → 441
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    100926219..100984870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039086190.2 → XP_038942118.1  transmembrane protein 104 isoform X3

    Conserved Domains (1) summary
    cl00456
    Location:22 → 59
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_039086189.1 → XP_038942117.1  transmembrane protein 104 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A1J9
    Conserved Domains (1) summary
    cl00456
    Location:25 → 440
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_039086191.2 → XP_038942119.1  transmembrane protein 104 isoform X4

    UniProtKB/TrEMBL
    A6HKL1
    Conserved Domains (1) summary
    cl00456
    Location:22 → 59
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_006247715.5 → XP_006247777.1  transmembrane protein 104 isoform X1

    See identical proteins and their annotated locations for XP_006247777.1

    UniProtKB/TrEMBL
    A0A8I6A1J9, D3ZU40
    Conserved Domains (2) summary
    COG0814
    Location:21 → 487
    SdaC; Amino acid permease [Amino acid transport and metabolism]
    cl00456
    Location:25 → 441
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  5. XM_039086192.1 → XP_038942120.1  transmembrane protein 104 isoform X5

    Conserved Domains (1) summary
    cl00456
    Location:18 → 213
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein Strain
Heading Accession and Version

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