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Tex2 testis expressed 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303611, updated on 2-Nov-2024

Summary

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Official Symbol
Tex2provided by RGD
Official Full Name
testis expressed 2provided by RGD
Primary source
RGD:1305112
See related
EnsemblRapid:ENSRNOG00000013659 AllianceGenome:RGD:1305112
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable lipid binding activity. Predicted to be involved in lipid transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TEX2 (testis expressed 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 196.5), Liver (RPKM 165.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tex2 in Genome Data Viewer
Location:
10q32.1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (91936390..92046360, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (91436629..91546240, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (94697962..94807544, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546698 Neighboring gene small nucleolar RNA, C/D box 104 Neighboring gene small nucleolar RNA, H/ACA box 50C Neighboring gene transfer RNA proline (anticodon AGG) 83 Neighboring gene platelet and endothelial cell adhesion molecule 1 Neighboring gene mast cell immunoglobulin-like receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables lipid binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
testis-expressed protein 2
Names
testis expressed gene 2
testis-expressed sequence 2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100554.1 → NP_001094024.1  testis-expressed protein 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A6HK48, G3V9L1
    Related
    ENSRNOP00000051987.1, ENSRNOT00000055114.4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    91936390..92046360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063269210.1 → XP_063125280.1  testis-expressed protein 2 isoform X1

    UniProtKB/TrEMBL
    A6HK48, G3V9L1

  2. XM_006247647.4 → XP_006247709.1  testis-expressed protein 2 isoform X2

    See identical proteins and their annotated locations for XP_006247709.1

    Conserved Domains (1) summary
    pfam10296
    Location:822 → 911
    DUF2404; Putative integral membrane protein conserved region (DUF2404)

  3. XM_063269209.1 → XP_063125279.1  testis-expressed protein 2 isoform X1

    UniProtKB/TrEMBL
    A6HK48, G3V9L1

  4. XM_006247646.5 → XP_006247708.1  testis-expressed protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006247708.1

    UniProtKB/TrEMBL
    A6HK48, G3V9L1
    Conserved Domains (1) summary
    pfam10296
    Location:822 → 911
    DUF2404; Putative integral membrane protein conserved region (DUF2404)

  5. XM_039087782.2 → XP_038943710.1  testis-expressed protein 2 isoform X3

  6. XM_039087783.2 → XP_038943711.1  testis-expressed protein 2 isoform X4

RNA

  1. XR_005490787.2 RNA Sequence

  2. XR_010055189.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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