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Acbd4 acyl-CoA binding domain containing 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303577, updated on 17-Aug-2024

Summary

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Official Symbol
Acbd4provided by RGD
Official Full Name
acyl-CoA binding domain containing 4provided by RGD
Primary source
RGD:1308404
See related
EnsemblRapid:ENSRNOG00000003108 AllianceGenome:RGD:1308404
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable fatty-acyl-CoA binding activity and lipid binding activity. Orthologous to human ACBD4 (acyl-CoA binding domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 92.7), Liver (RPKM 43.8) and 9 other tissues See more
Orthologs
human all
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Genomic context

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Location:
10q32.1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (88548146..88558588)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (88048058..88062612)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (91186131..91200081)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene dephospho-CoA kinase domain containing Neighboring gene N-myristoyltransferase 1 Neighboring gene phospholipase C, delta 3 Neighboring gene HEXIM P-TEFb complex subunit 1 Neighboring gene HEXIM P-TEFb complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables fatty-acyl-CoA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables fatty-acyl-CoA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in fatty acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
acyl-CoA-binding domain-containing protein 4
Names
acyl-Coenzyme A binding domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012013.1 → NP_001012013.1  acyl-CoA-binding domain-containing protein 4

    See identical proteins and their annotated locations for NP_001012013.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076387
    UniProtKB/Swiss-Prot
    Q6DGF9
    UniProtKB/TrEMBL
    A0A8I6A6R0
    Conserved Domains (1) summary
    pfam00887
    Location:11 → 91
    ACBP; Acyl CoA binding protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    88548146..88558588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008768287.4 → XP_008766509.1  acyl-CoA-binding domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A6R0
    Conserved Domains (1) summary
    cd00435
    Location:11 → 95
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...

  2. XM_006247508.5 → XP_006247570.1  acyl-CoA-binding domain-containing protein 4 isoform X2

    See identical proteins and their annotated locations for XP_006247570.1

    UniProtKB/TrEMBL
    A0A8I6A6R0, A6HJP7
    Related
    ENSRNOP00000004163.6, ENSRNOT00000004163.6
    Conserved Domains (1) summary
    cd00435
    Location:11 → 95
    ACBP; Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a ...

  3. XM_006247510.5 → XP_006247572.1  acyl-CoA-binding domain-containing protein 4 isoform X4

    See identical proteins and their annotated locations for XP_006247572.1

    UniProtKB/Swiss-Prot
    Q6DGF9
    UniProtKB/TrEMBL
    A0A8I6A6R0
    Conserved Domains (1) summary
    pfam00887
    Location:11 → 91
    ACBP; Acyl CoA binding protein

  4. XM_039086115.2 → XP_038942043.1  acyl-CoA-binding domain-containing protein 4 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A6R0, A0A8L2UHQ5
    Conserved Domains (1) summary
    pfam00887
    Location:11 → 91
    ACBP; Acyl CoA binding protein

  5. XM_063269166.1 → XP_063125236.1  acyl-CoA-binding domain-containing protein 4 isoform X4

    UniProtKB/Swiss-Prot
    Q6DGF9
    UniProtKB/TrEMBL
    A0A8I6A6R0

  6. XM_063269167.1 → XP_063125237.1  acyl-CoA-binding domain-containing protein 4 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A6R0, A0A8L2UHQ5

  7. XM_063269163.1 → XP_063125233.1  acyl-CoA-binding domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A6R0

  8. XM_063269164.1 → XP_063125234.1  acyl-CoA-binding domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A6R0, A6HJP7

  9. XM_063269169.1 → XP_063125239.1  acyl-CoA-binding domain-containing protein 4 isoform X8

    UniProtKB/TrEMBL
    A0A8I6A6R0

  10. XM_063269168.1 → XP_063125238.1  acyl-CoA-binding domain-containing protein 4 isoform X6

    UniProtKB/TrEMBL
    A0A8I6A6R0
    Related
    ENSRNOP00000088718.2, ENSRNOT00000118852.2

  11. XM_063269170.1 → XP_063125240.1  acyl-CoA-binding domain-containing protein 4 isoform X9

    UniProtKB/TrEMBL
    A6HJQ0
    Related
    ENSRNOP00000111179.1, ENSRNOT00000136036.1

  12. XM_006247509.5 → XP_006247571.1  acyl-CoA-binding domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A8I6A6R0
    Conserved Domains (1) summary
    pfam00887
    Location:11 → 91
    ACBP; Acyl CoA binding protein

  13. XM_006247512.5 → XP_006247574.1  acyl-CoA-binding domain-containing protein 4 isoform X7

    UniProtKB/TrEMBL
    A0A8I6A6R0
    Conserved Domains (1) summary
    pfam00887
    Location:11 → 91
    ACBP; Acyl CoA binding protein

  14. XM_063269171.1 → XP_063125241.1  acyl-CoA-binding domain-containing protein 4 isoform X9

    UniProtKB/TrEMBL
    A6HJQ0
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DGF9.1 GenPept UniProtKB/Swiss-Prot:Q6DGF9

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