U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

copg2 COPI coat complex subunit gamma 2 [ Danio rerio (zebrafish) ]

Gene ID: 30187, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
copg2provided by ZNC
Official Full Name
COPI coat complex subunit gamma 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-000208-8
See related
Ensembl:ENSDARG00000034823 AllianceGenome:ZFIN:ZDB-GENE-000208-8
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
copg; cb943; fi31b06; wu:fi31b06
Summary
Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; notochord; periderm; polster; and solid lens vesicle. Orthologous to human COPG2 (COPI coat complex subunit gamma 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See copg2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (15983609..15996191)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (15984854..15997436)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene si:dkey-117n7.5 Neighboring gene urocortin 3, like Neighboring gene mesoderm specific transcript Neighboring gene uncharacterized LOC110439358 Neighboring gene uncharacterized LOC101884691

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Structure and expression of the zebrafish mest gene, an ortholog of mammalian imprinted gene PEG1/MEST. Hahn Y, et al. Biochim Biophys Acta, 2005 Nov 10. PMID 16263186
  2. Impairment of Cargo Transportation Caused by gbf1 Mutation Disrupts Vascular Integrity and Causes Hemorrhage in Zebrafish Embryos. Chen J, et al. J Biol Chem, 2017 Feb 10. PMID 28003365, Free PMC Article
  3. Analyses of mRNA structure dynamics identify embryonic gene regulatory programs. Beaudoin JD, et al. Nat Struct Mol Biol, 2018 Aug. PMID 30061596, Free PMC Article
  4. Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production. Newman M, et al. Mol Brain, 2019 May 3. PMID 31053140, Free PMC Article
  5. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in organelle transport along microtubule IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of COPI vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum-Golgi intermediate compartment IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
coatomer subunit gamma-2
Names
coatomer protein complex, subunit gamma 2
gamma-2-COP
gamma-2-coat protein
gamma-cop
gamma2-cop

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_130994.1 → NP_571069.1  coatomer subunit gamma-2

    See identical proteins and their annotated locations for NP_571069.1

    Status: PROVISIONAL

    Source sequence(s)
    AF191561
    UniProtKB/Swiss-Prot
    Q1L8N9, Q4V9K1, Q7ZVC5, Q9PUE3, Q9PUE4
    Related
    ENSDARP00000043659.7, ENSDART00000043660.8
    Conserved Domains (5) summary
    COG5240
    Location:7 → 868
    SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
    pfam08752
    Location:615 → 758
    COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain
    pfam11701
    Location:325 → 497
    UNC45-central; Myosin-binding striated muscle assembly central
    pfam16381
    Location:760 → 872
    Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform
    sd00044
    Location:398 → 423
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    15983609..15996191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9PUE4.2 GenPept UniProtKB/Swiss-Prot:Q9PUE4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous