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VPS25 ESCRT-II subunit protein VPS25 [ Sugiyamaella lignohabitans ]

Gene ID: 30033423, updated on 9-Jan-2024

Summary

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Gene symbol
VPS25
Gene description
ESCRT-II subunit protein VPS25
Locus tag
AWJ20_1602
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sugiyamaella lignohabitans (strain: CBS 10342, type-material: culture from holotype of Candida lignohabitans)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Trichomonascaceae; Sugiyamaella
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Genomic context

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See VPS25 in Genome Data Viewer
Location:
chromosome: A
Exon count:
1
Sequence:
Chromosome: A; NC_031672.1 (4924201..4924836)

Chromosome A - NC_031672.1Genomic Context describing neighboring genes Neighboring gene Aim25p Neighboring gene mitochondrial 37S ribosomal protein RSM26 Neighboring gene protein phosphatase regulator REG1 Neighboring gene Vps54p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_031672.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ESCRT-II subunit protein VPS25
XP_018735793.1
  • Component of the ESCRT-II complex; ESCRT-II is involved in ubiquitin-dependent sorting of proteins into the endosome; GO_component: GO:0000814 - ESCRT II complex [Evidence IDA] [PMID 12194858]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA,IMP] [PMID 15329733]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA,IMP] [PMID 15469844]; GO_process: GO:0000433 - negative regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 11278625]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12194858]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_031672.1 Reference assembly

    Range
    4924201..4924836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018878496.1 → XP_018735793.1  ESCRT-II subunit protein VPS25 [Sugiyamaella lignohabitans]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A167DUU7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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