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Mrps15 mitochondrial ribosomal protein S15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298517, updated on 2-Nov-2024

Summary

Official Symbol
Mrps15provided by RGD
Official Full Name
mitochondrial ribosomal protein S15provided by RGD
Primary source
RGD:1359675
See related
EnsemblRapid:ENSRNOG00000008279 AllianceGenome:RGD:1359675
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrial ribosome; nucleolus; and nucleoplasm. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS15 (mitochondrial ribosomal protein S15). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 217.3), Heart (RPKM 196.0) and 9 other tissues See more
Orthologs
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Genomic context

See Mrps15 in Genome Data Viewer
Location:
5q36
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (143606141..143616734)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (138321610..138332205)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (144054452..144065045)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta, pseudogene 5 Neighboring gene colony stimulating factor 3 receptor Neighboring gene organic solute carrier partner 1 Neighboring gene ribosomal protein S14, pseudogene 7 Neighboring gene LSM10, U7 small nuclear RNA associated

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC95073

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in mitochondrial matrix ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial matrix ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in mitochondrial ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of mitochondrial small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
part_of mitochondrial small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small ribosomal subunit protein uS15m
Names
28S ribosomal protein S15, mitochondrial
MRP-S15
S15mt

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007653.1NP_001007654.1  small ribosomal subunit protein uS15m

    See identical proteins and their annotated locations for NP_001007654.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083856
    UniProtKB/Swiss-Prot
    Q5XI37
    UniProtKB/TrEMBL
    A0A8I6A3V9, A6IS84
    Related
    ENSRNOP00000011565.3, ENSRNOT00000011565.5
    Conserved Domains (1) summary
    pfam00312
    Location:112186
    Ribosomal_S15; Ribosomal protein S15

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    143606141..143616734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)