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cas6f type I-F CRISPR-associated endoribonuclease Cas6/Csy4 [ Pseudoalteromonas shioyasakiensis ]

Gene ID: 29845123, updated on 17-May-2023

Summary

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Gene symbol
cas6f
Gene description
type I-F CRISPR-associated endoribonuclease Cas6/Csy4
Locus tag
PASHI_RS20925
Gene type
protein coding
Organism
Pseudoalteromonas shioyasakiensis (strain: JCM 18891, type-material: type strain of Pseudoalteromonas shioyasakiensis)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas
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Genomic context

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NZ_LRUE01000024.1Genomic Context describing neighboring genes Neighboring gene TniQ family protein Neighboring gene type I-F CRISPR-associated protein Csy2 Neighboring gene type I-F CRISPR-associated protein Csy3 Neighboring gene MbcA/ParS/Xre antitoxin family protein Neighboring gene DUF3147 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_LRUE01000024.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA. Haurwitz RE, et al. EMBO J, 2012 Jun 13. PMID 22522703, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
type I-F CRISPR-associated endoribonuclease Cas6/Csy4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_LRUE01000024.1 Reference assembly

    Range
    434656..435255
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_062566911.1 MULTISPECIES: type I-F CRISPR-associated endoribonuclease Cas6/Csy4 [Pseudoalteromonas]

    Conserved Domains (1) summary
    cl09835
    Location:3 → 196
    Cas6_I-F; CRISPR/Cas system-associated RAMP superfamily protein Cas6f

Gene LinkOut

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Research Materials