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LINC03124 long intergenic non-protein coding RNA 3124 [ Homo sapiens (human) ]

Gene ID: 29798, updated on 5-Mar-2024

Summary

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Official Symbol
LINC03124provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3124provided by HGNC
Primary source
HGNC:HGNC:25077
See related
Ensembl:ENSG00000287151 AllianceGenome:HGNC:25077
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2orf27; C2orf27A; C2orf27B
Expression
Broad expression in brain (RPKM 3.1), testis (RPKM 3.1) and 23 other tissues See more
Orthologs
all
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Genomic context

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Location:
2q21.1-q21.2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (131682499..131767404)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (132117144..132202925)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (132440072..132524977)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene POTE ankyrin domain family member K, pseudogene Neighboring gene RNA, U6 small nuclear 617, pseudogene Neighboring gene long intergenic non-protein coding RNA 1087 Neighboring gene GRAM domain containing 4 pseudogene 8 Neighboring gene CRISPRi-validated cis-regulatory element chr2.4815 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:132429946-132430584 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:132430585-132431224 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:132431225-132431862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16539 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11970 Neighboring gene TOMM40 pseudogene 4 Neighboring gene neurobeachin pseudogene 2 Neighboring gene uncharacterized LOC100419921 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:132523951-132524452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:132532914-132533461 Neighboring gene CDRT15 pseudogene 4 Neighboring gene CDRT15 pseudogene 3 Neighboring gene apical junction component 1 homolog pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. Majewska M, et al. Int J Mol Sci, 2018 Jun 27. PMID 29954144, Free PMC Article
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Hillier LW, et al. Nature, 2005 Apr 7. PMID 15815621
  3. Large-scale concatenation cDNA sequencing. Yu W, et al. Genome Res, 1997 Apr. PMID 9110174, Free PMC Article
  4. A "double adaptor" method for improved shotgun library construction. Andersson B, et al. Anal Biochem, 1996 Apr 5. PMID 8619474
  5. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • uncharacterized protein C2orf27
  • uncharacterized protein C2orf27A

Clone Names

  • MGC138394, DKFZp686A02119

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149013.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838

  2. NR_149014.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838
    Related
    ENST00000653458.1

  3. NR_149015.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838

  4. NR_149016.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838

  5. NR_167887.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838

  6. NR_167888.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838
    Related
    ENST00000657415.1

  7. NR_167889.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    131682499..131767404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187528.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    1..71290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    132117144..132202925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001354871.2: Suppressed sequence

    Description
    NM_001354871.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  2. NM_001354872.2: Suppressed sequence

    Description
    NM_001354872.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  3. NM_013310.5: Suppressed sequence

    Description
    NM_013310.5: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DPF5.1 GenPept UniProtKB/Swiss-Prot:P0DPF5

Gene LinkOut

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