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Phtf2 putative homeodomain transcription factor 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 296762, updated on 2-Nov-2024

Summary

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Official Symbol
Phtf2provided by RGD
Official Full Name
putative homeodomain transcription factor 2provided by RGD
Primary source
RGD:1310593
See related
EnsemblRapid:ENSRNOG00000013517 AllianceGenome:RGD:1310593
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in endoplasmic reticulum. Orthologous to human PHTF2 (putative homeodomain transcription factor 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 233.6), Heart (RPKM 122.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Phtf2 in Genome Data Viewer
Location:
4q11
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (15107341..15222683)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (14215190..14330549)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (10823191..10938273)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486554 Neighboring gene round spermatid basic protein 1-like Neighboring gene Alu-mediated CDKN1A/p21 transcriptional regulator Neighboring gene transmembrane protein 60 Neighboring gene uncharacterized LOC120102478 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 2 Neighboring gene uncharacterized LOC120102477

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein PHTF2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106577.2 → NP_001100047.2  protein PHTF2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A6K5D0, D3ZSS0
    Related
    ENSRNOP00000059716.3, ENSRNOT00000066739.5
    Conserved Domains (1) summary
    pfam12129
    Location:5 → 154
    Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    15107341..15222683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063285715.1 → XP_063141785.1  protein PHTF2 isoform X5

  2. XM_063285711.1 → XP_063141781.1  protein PHTF2 isoform X2

    Related
    ENSRNOP00000108919.1, ENSRNOT00000145889.1

  3. XM_063285710.1 → XP_063141780.1  protein PHTF2 isoform X1

    UniProtKB/TrEMBL
    D3ZSS0

  4. XM_063285713.1 → XP_063141783.1  protein PHTF2 isoform X3

  5. XM_063285714.1 → XP_063141784.1  protein PHTF2 isoform X3

  6. XM_063285712.1 → XP_063141782.1  protein PHTF2 isoform X3

  7. XM_063285709.1 → XP_063141779.1  protein PHTF2 isoform X1

    UniProtKB/TrEMBL
    D3ZSS0

  8. XM_039107250.2 → XP_038963178.1  protein PHTF2 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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