U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Potefam1 POTE ankyrin domain family member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 295999, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Potefam1provided by RGD
Official Full Name
POTE ankyrin domain family member 1provided by RGD
Primary source
RGD:1309783
See related
EnsemblRapid:ENSRNOG00000064354 AllianceGenome:RGD:1309783
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ankrd30a; RGD1309783
Summary
Predicted to be located in membrane. Orthologous to human ANKRD30A (ankyrin repeat domain 30A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 60.8) See more
Orthologs
mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Potefam1 in Genome Data Viewer
Location:
3q34
Exon count:
75
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (118095804..118281502, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (97641258..97826965, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (102293156..102430302, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene anoctamin 3 Neighboring gene ribosomal protein L19, pseudogene 1 Neighboring gene prohibitin-2-like Neighboring gene olfactory receptor family 4 subfamily F member 52 Neighboring gene olfactory receptor family 4 subfamily F member 53

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: uncharacterized protein Potefam1; uncharacterized protein LOC295999
Names
POTE ankyrin domain family member A
ankyrin repeat domain 30A
ankyrin repeat domain-containing protein 26-like
ankyrin repeat domain-containing protein 62
putative ankyrin repeat domain-containing protein 19

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    118095804..118281502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039106462.2 → XP_038962390.1  LOW QUALITY PROTEIN: uncharacterized protein Potefam1

    UniProtKB/TrEMBL
    A0A8I6A697
    Related
    ENSRNOP00000086476.2, ENSRNOT00000107600.2
    Conserved Domains (4) summary
    COG0419
    Location:1824 → 2075
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    sd00045
    Location:80 → 109
    ANK; ANK repeat [structural motif]
    pfam12001
    Location:2011 → 2115
    DUF3496; Domain of unknown function (DUF3496)
    cl39094
    Location:63 → 278
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.