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C1h19orf81 simlar to human chromosome 19 open reading frame 81 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292874, updated on 10-Oct-2024

Summary

Official Symbol
C1h19orf81provided by RGD
Official Full Name
simlar to human chromosome 19 open reading frame 81provided by RGD
Primary source
RGD:1309036
See related
EnsemblRapid:ENSRNOG00000037298 AllianceGenome:RGD:1309036
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309036
Summary
Orthologous to human C19orf81 (chromosome 19 open reading frame 81). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 21.4), Testes (RPKM 18.7) and 9 other tissues See more
Orthologs
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Genomic context

See C1h19orf81 in Genome Data Viewer
Location:
1q22
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (103993832..104008301, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (94857301..94871323, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (100346096..100361340, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ribosome production factor 1, pseudogene 1 Neighboring gene C-type lectin domain containing 11A Neighboring gene SH3 and multiple ankyrin repeat domains 1 Neighboring gene synaptotagmin 3 Neighboring gene uncharacterized LOC108349570 Neighboring gene leucine rich repeat containing 4B

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
putative uncharacterized protein C19orf81 homolog
Names
Eso3 protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401372.1NP_001388301.1  putative uncharacterized protein C19orf81 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I5Y0H4, A6JAN5

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    103993832..104008301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017588924.3XP_017444413.1  putative uncharacterized protein C19orf81 homolog isoform X3

    Conserved Domains (1) summary
    pfam15876
    Location:1140
    DUF4732; Domain of unknown function (DUF4732)
  2. XM_017588925.3XP_017444414.1  putative uncharacterized protein C19orf81 homolog isoform X3

    Conserved Domains (1) summary
    pfam15876
    Location:1140
    DUF4732; Domain of unknown function (DUF4732)
  3. XM_039104744.2XP_038960672.1  putative uncharacterized protein C19orf81 homolog isoform X3

    Conserved Domains (1) summary
    pfam15876
    Location:1140
    DUF4732; Domain of unknown function (DUF4732)
  4. XM_039104739.2XP_038960667.1  putative uncharacterized protein C19orf81 homolog isoform X2

    Conserved Domains (1) summary
    pfam15876
    Location:40165
    DUF4732; Domain of unknown function (DUF4732)
  5. XM_063283908.1XP_063139978.1  putative uncharacterized protein C19orf81 homolog isoform X1

    Related
    ENSRNOP00000083009.2, ENSRNOT00000103745.2

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001106255.1: Suppressed sequence

    Description
    NM_001106255.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.