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Tmem255b transmembrane protein 255B [ Rattus norvegicus (Norway rat) ]

Gene ID: 290877, updated on 10-Oct-2024

Summary

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Official Symbol
Tmem255bprovided by RGD
Official Full Name
transmembrane protein 255Bprovided by RGD
Primary source
RGD:1566042
See related
EnsemblRapid:ENSRNOG00000026336 AllianceGenome:RGD:1566042
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam70b; RGD1566042
Summary
Predicted to be integral component of membrane. Orthologous to human TMEM255B (transmembrane protein 255B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 54.0), Lung (RPKM 30.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem255b in Genome Data Viewer
Location:
16q12.5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (82759236..82810450, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (76079840..76108179, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (81181095..81209429)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome 13 open reading frame 46 Neighboring gene uncharacterized LOC134482420 Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene growth arrest specific 6 Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene ATPase H+/K+ transporting subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 255B
Names
family with sequence similarity 70, member B
protein FAM70B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106094.3 → NP_001099564.2  transmembrane protein 255B

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000016
    UniProtKB/TrEMBL
    A0A096MIW1, A0A096MK90, A6IWH2, A6IWH3
    Related
    ENSRNOP00000068423.2, ENSRNOT00000076516.4
    Conserved Domains (1) summary
    pfam14967
    Location:16 → 325
    FAM70; FAM70 protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    82759236..82810450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063275259.1 → XP_063131329.1  transmembrane protein 255B isoform X3

  2. XM_063275257.1 → XP_063131327.1  transmembrane protein 255B isoform X2

  3. XM_017600045.3 → XP_017455534.1  transmembrane protein 255B isoform X1

  4. XM_063275260.1 → XP_063131330.1  transmembrane protein 255B isoform X4

  5. XM_039094419.2 → XP_038950347.1  transmembrane protein 255B isoform X6

    Conserved Domains (2) summary
    TIGR01622
    Location:12 → 108
    SF-CC1; splicing factor, CC1-like family
    pfam14967
    Location:101 → 225
    FAM70; FAM70 protein

  6. XM_039094418.2 → XP_038950346.1  transmembrane protein 255B isoform X5

    Conserved Domains (2) summary
    TIGR01622
    Location:12 → 108
    SF-CC1; splicing factor, CC1-like family
    pfam14967
    Location:101 → 244
    FAM70; FAM70 protein
Nucleotide Protein Strain
Heading Accession and Version

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