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HIPK2 homeodomain interacting protein kinase 2 [ Homo sapiens (human) ]

Gene ID: 28996, updated on 17-Mar-2024

Summary

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Official Symbol
HIPK2provided by HGNC
Official Full Name
homeodomain interacting protein kinase 2provided by HGNC
Primary source
HGNC:HGNC:14402
See related
Ensembl:ENSG00000064393 MIM:606868; AllianceGenome:HGNC:14402
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRO0593
Summary
This gene encodes a conserved serine/threonine kinase that is a member of the homeodomain-interacting protein kinase family. The encoded protein interacts with homeodomain transcription factors and many other transcription factors such as p53, and can function as both a corepressor and a coactivator depending on the transcription factor and its subcellular localization. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]
Expression
Ubiquitous expression in brain (RPKM 22.7), kidney (RPKM 17.9) and 24 other tissues See more
Orthologs
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Genomic context

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See HIPK2 in Genome Data Viewer
Location:
7q34
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (139561570..139777998, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (140874868..141091290, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (139246316..139477797, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ST13, Hsp70 interacting protein pseudogene 17 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139226381-139227154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139229072-139229673 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26764 Neighboring gene C-type lectin domain family 2 member L Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139253336-139253836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139253837-139254337 Neighboring gene ERH pseudogene 1 Neighboring gene uncharacterized LOC105375530 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26765 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:139311135-139311345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26766 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18698 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:139365244-139366443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26767 Neighboring gene NANOG hESC enhancer GRCh37_chr7:139377579-139378080 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:139411674-139412500 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139415914-139416414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139416415-139416915 Neighboring gene Sharpr-MPRA regulatory region 6205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18699 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18700 Neighboring gene Sharpr-MPRA regulatory region 3006 Neighboring gene MPRA-validated peak6784 silencer Neighboring gene thromboxane A synthase 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:139528736-139529935 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26770 Neighboring gene uncharacterized LOC107986853 Neighboring gene Sharpr-MPRA regulatory region 12519 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:139613504-139614703 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:139615605-139616804 Neighboring gene uncharacterized LOC105375532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:139637955-139638455

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. HIPK2 in the physiology of nervous system and its implications in neurological disorders. Sardina F, et al. Biochim Biophys Acta Mol Cell Res, 2023 Jun. PMID 36935052, Free PMC Article
  2. HIPK2 in cancer biology and therapy: Recent findings and future perspectives. Conte A, et al. Cell Signal, 2023 Jan. PMID 36241057
  3. The malignant property of circHIPK2 for angiogenesis and chemoresistance in non-small cell lung cancer. Ren M, et al. Exp Cell Res, 2022 Oct 15. PMID 35863454
  4. Exercise and cardioprotection: A "HIP" side of HIPK2 in the heart. Phrommintikul A, et al. EBioMedicine, 2022 Jan. PMID 34929491, Free PMC Article
  5. HIPK2 is a potential predictive marker of a favorable response for adjuvant chemotherapy in stage II colorectal cancer. Verdina A, et al. Oncol Rep, 2021 Mar. PMID 33650652

See all (212) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Circ_0008410 contributes to fibroblast-like synoviocytes dysfunction by regulating miR-149-5p/HIPK2 axis.
    Title: Circ_0008410 contributes to fibroblast-like synoviocytes dysfunction by regulating miR-149-5p/HIPK2 axis.
  2. MicroRNA-483-3p Inhibitor Ameliorates Sepsis-Induced Intestinal Injury by Attenuating Cell Apoptosis and Cytotoxicity Via Regulating HIPK2.
    Title: MicroRNA-483-3p Inhibitor Ameliorates Sepsis-Induced Intestinal Injury by Attenuating Cell Apoptosis and Cytotoxicity Via Regulating HIPK2.
  3. Plasma circRNA HIPK2 as a putative biomarker for the diagnosis and prediction of therapeutic effects in major depressive disorder.
    Title: Plasma circRNA HIPK2 as a putative biomarker for the diagnosis and prediction of therapeutic effects in major depressive disorder.
  4. miR-147b is an oncomiR acting synergistically with HIPK2 to promote pancreatic carcinogenesis.
    Title: miR-147b is an oncomiR acting synergistically with HIPK2 to promote pancreatic carcinogenesis.
  5. Adipose-derived stem cell exosome NFIC improves diabetic foot ulcers by regulating miR-204-3p/HIPK2.
    Title: Adipose-derived stem cell exosome NFIC improves diabetic foot ulcers by regulating miR-204-3p/HIPK2.
  6. Determination of homeodomain interacting protein kinase 2 polymorphisms rs2058265, rs6464214, and rs7456421 in patients with kidney stone.
    Title: Determination of homeodomain interacting protein kinase 2 polymorphisms rs2058265, rs6464214, and rs7456421 in patients with kidney stone.
  7. HIPK2 in the physiology of nervous system and its implications in neurological disorders.
    Title: HIPK2 in the physiology of nervous system and its implications in neurological disorders.
  8. LncRNA PSCK6-AS1-HIPK2 promotes Th1 differentiation via STAT1 phosphorylation to regulate colitis-related mucosal barrier damage.
    Title: LncRNA PSCK6-AS1-HIPK2 promotes Th1 differentiation via STAT1 phosphorylation to regulate colitis-related mucosal barrier damage.
  9. HIPK2 in cancer biology and therapy: Recent findings and future perspectives.
    Title: HIPK2 in cancer biology and therapy: Recent findings and future perspectives.
  10. Inhibition of HIPK2 protects stress-induced pathological cardiac remodeling.
    Title: Inhibition of HIPK2 protects stress-induced pathological cardiac remodeling.
Submit: New GeneRIF Correction See all GeneRIFs (151)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ23711, DKFZp686K02111

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II-specific DNA-binding transcription factor binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables RNA polymerase II-specific DNA-binding transcription factor binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables SMAD binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables SMAD binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein serine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein serine/threonine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein serine/threonine kinase activity TAS
Traceable Author Statement
more info
  
enables protein tyrosine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to transcription coactivator activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transcription corepressor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables virion binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response, signal transduction by p53 class mediator IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in PML body organization TAS
Traceable Author Statement
more info
 PubMed 
involved_in SMAD protein signal transduction IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in adult walking behavior IEA
Inferred from Electronic Annotation
more info
  
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
  
involved_in cell population proliferation IEA
Inferred from Electronic Annotation
more info
  
involved_in cellular response to hypoxia TAS
Traceable Author Statement
more info
 PubMed 
involved_in embryonic camera-type eye morphogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in embryonic retina morphogenesis in camera-type eye IEA
Inferred from Electronic Annotation
more info
  
involved_in epigenetic regulation of gene expression TAS
Traceable Author Statement
more info
  
involved_in erythrocyte differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in eye development ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in gene expression IEA
Inferred from Electronic Annotation
more info
  
involved_in intrinsic apoptotic signaling pathway NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator TAS
Traceable Author Statement
more info
 PubMed 
involved_in iris morphogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in lens induction in camera-type eye IEA
Inferred from Electronic Annotation
more info
  
involved_in lung morphogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of BMP signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
  
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in peptidyl-serine phosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in peptidyl-serine phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in peptidyl-threonine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in peptidyl-threonine phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of JNK cascade IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of angiogenesis IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of protein binding ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of transforming growth factor beta receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein phosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of cell cycle TAS
Traceable Author Statement
more info
 PubMed 
involved_in regulation of signal transduction by p53 class mediator TAS
Traceable Author Statement
more info
  
involved_in respiratory system process IEA
Inferred from Electronic Annotation
more info
  
involved_in retina layer formation IEA
Inferred from Electronic Annotation
more info
  
involved_in smoothened signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in thyroid gland development IEA
Inferred from Electronic Annotation
more info
  
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in voluntary musculoskeletal movement IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
colocalizes_with PML body IBA
Inferred from Biological aspect of Ancestor
more info
  
colocalizes_with PML body IDA
Inferred from Direct Assay
more info
 PubMed 
part_of RNA polymerase II transcription regulator complex ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nuclear body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nuclear body TAS
Traceable Author Statement
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
located_in nucleoplasm TAS
Traceable Author Statement
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
homeodomain-interacting protein kinase 2
Names
hHIPk2
NP_001106710.1
NP_073577.3
XP_011514379.1
XP_011514380.1
XP_011514381.1
XP_011514382.1
XP_011514383.1
XP_047276216.1
XP_047276217.1
XP_047276218.1
XP_047276219.1
XP_047276220.1
XP_047276221.1
XP_054213962.1
XP_054213963.1
XP_054213964.1
XP_054213965.1
XP_054213966.1
XP_054213967.1
XP_054213968.1
XP_054213969.1
XP_054213970.1
XP_054213971.1

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113239.3 → NP_001106710.1  homeodomain-interacting protein kinase 2 isoform 2

    See identical proteins and their annotated locations for NP_001106710.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment in the CDS, as compared to variant 1. The resulting isoform (2) is shorter, as compared to isoform 1.
    Source sequence(s)
    AC005531, AC006021, AF208291, AF326592, AI580907, CK818532
    Consensus CDS
    CCDS75666.1
    UniProtKB/Swiss-Prot
    Q9H2X6
    Related
    ENSP00000413724.2, ENST00000428878.6
    Conserved Domains (2) summary
    smart00220
    Location:199 → 527
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14227
    Location:183 → 537
    STKc_HIPK2; Catalytic domain of the Serine/Threonine Kinase, Homeodomain-Interacting Protein Kinase 2

  2. NM_022740.5 → NP_073577.3  homeodomain-interacting protein kinase 2 isoform 1

    See identical proteins and their annotated locations for NP_073577.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the full-length isoform (1).
    Source sequence(s)
    AC005531, AC006021, AF208291, AF326592, AI580907, CK818532
    Consensus CDS
    CCDS75667.1
    UniProtKB/Swiss-Prot
    Q75MR7, Q8WWI4, Q9H2X6, Q9H2Y1
    Related
    ENSP00000385571.3, ENST00000406875.8
    Conserved Domains (2) summary
    smart00220
    Location:199 → 527
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14227
    Location:183 → 537
    STKc_HIPK2; Catalytic domain of the Serine/Threonine Kinase, Homeodomain-Interacting Protein Kinase 2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    139561570..139777998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047420265.1 → XP_047276221.1  homeodomain-interacting protein kinase 2 isoform X8

  2. XM_047420260.1 → XP_047276216.1  homeodomain-interacting protein kinase 2 isoform X6

  3. XM_047420264.1 → XP_047276220.1  homeodomain-interacting protein kinase 2 isoform X7

  4. XM_047420261.1 → XP_047276217.1  homeodomain-interacting protein kinase 2 isoform X7

  5. XM_047420262.1 → XP_047276218.1  homeodomain-interacting protein kinase 2 isoform X7

  6. XM_047420263.1 → XP_047276219.1  homeodomain-interacting protein kinase 2 isoform X7

  7. XM_011516080.4 → XP_011514382.1  homeodomain-interacting protein kinase 2 isoform X4

    Conserved Domains (2) summary
    smart00220
    Location:378 → 706
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14227
    Location:362 → 716
    STKc_HIPK2; Catalytic domain of the Serine/Threonine Kinase, Homeodomain-Interacting Protein Kinase 2

  8. XM_011516079.4 → XP_011514381.1  homeodomain-interacting protein kinase 2 isoform X3

    Conserved Domains (2) summary
    smart00220
    Location:378 → 706
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14227
    Location:362 → 716
    STKc_HIPK2; Catalytic domain of the Serine/Threonine Kinase, Homeodomain-Interacting Protein Kinase 2

  9. XM_011516078.4 → XP_011514380.1  homeodomain-interacting protein kinase 2 isoform X2

    Conserved Domains (2) summary
    smart00220
    Location:378 → 706
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14227
    Location:362 → 716
    STKc_HIPK2; Catalytic domain of the Serine/Threonine Kinase, Homeodomain-Interacting Protein Kinase 2

  10. XM_011516077.4 → XP_011514379.1  homeodomain-interacting protein kinase 2 isoform X1

    Conserved Domains (2) summary
    smart00220
    Location:378 → 706
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14227
    Location:362 → 716
    STKc_HIPK2; Catalytic domain of the Serine/Threonine Kinase, Homeodomain-Interacting Protein Kinase 2

  11. XM_011516081.3 → XP_011514383.1  homeodomain-interacting protein kinase 2 isoform X5

    Conserved Domains (2) summary
    smart00220
    Location:207 → 535
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14227
    Location:191 → 545
    STKc_HIPK2; Catalytic domain of the Serine/Threonine Kinase, Homeodomain-Interacting Protein Kinase 2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    140874868..141091290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054357996.1 → XP_054213971.1  homeodomain-interacting protein kinase 2 isoform X8

  2. XM_054357992.1 → XP_054213967.1  homeodomain-interacting protein kinase 2 isoform X6

  3. XM_054357995.1 → XP_054213970.1  homeodomain-interacting protein kinase 2 isoform X7

  4. XM_054357993.1 → XP_054213968.1  homeodomain-interacting protein kinase 2 isoform X7

  5. XM_054357994.1 → XP_054213969.1  homeodomain-interacting protein kinase 2 isoform X7

  6. XM_054357990.1 → XP_054213965.1  homeodomain-interacting protein kinase 2 isoform X4

  7. XM_054357989.1 → XP_054213964.1  homeodomain-interacting protein kinase 2 isoform X3

  8. XM_054357988.1 → XP_054213963.1  homeodomain-interacting protein kinase 2 isoform X2

  9. XM_054357987.1 → XP_054213962.1  homeodomain-interacting protein kinase 2 isoform X1

  10. XM_054357991.1 → XP_054213966.1  homeodomain-interacting protein kinase 2 isoform X5

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9H2X6.2 GenPept UniProtKB/Swiss-Prot:Q9H2X6

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