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TIF6 TIF6 [ Nakaseomyces glabratus ]

Gene ID: 2890311, updated on 19-Jun-2024

Summary

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Gene symbol
TIF6
Gene description
TIF6
Locus tag
GVI51_K02343
See related
FungiDB:GVI51_K02343; VEuPathDB:GVI51_K02343
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nakaseomyces glabratus (strain: ATCC 2001, nat-host: Homo sapiens, culture-collection: ATCC:2001, type-material: type material of Cryptococcus glabratus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces
Old locus tag
CAGL0K02497g
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Genomic context

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See TIF6 in Genome Data Viewer
Location:
chromosome: K
Exon count:
1
Sequence:
Chromosome: K; NC_088961.1 (227785..228522)

Chromosome K - NC_088961.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DSS4 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_088961.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays. Xu Z, et al. Mol Microbiol, 2020 Jun. PMID 32068314
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • CAGL0K02497g
    Translation initiation factor 6 (eIF6)

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribosomal large subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in assembly of large subunit precursor of preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytosolic ribosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TIF6
XP_448334.1
  • CAGL0K02497g
    Translation initiation factor 6 (eIF6)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_088961.1 Reference assembly

    Range
    227785..228522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_448334.1 → XP_448334.1  TIF6 [Nakaseomyces glabratus]

    See identical proteins and their annotated locations for XP_448334.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0W0DCP1, Q6FN60
    Conserved Domains (1) summary
    PTZ00136
    Location:1 → 245
    PTZ00136; eukaryotic translation initiation factor 6-like protein; Provisional
Nucleotide Protein
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