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CH63R_04134 Glycogen synthase [ Colletotrichum higginsianum IMI 349063 ]

Gene ID: 28863216, updated on 18-Sep-2024

Summary

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Gene symbol
CH63R_04134
Gene description
Glycogen synthase
Locus tag
CH63R_04134
See related
FungiDB:CH63R_04134; VEuPathDB:CH63R_04134
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Colletotrichum higginsianum IMI 349063 (strain: IMI 349063, nat-host: Brassica rapa subsp. chinensis)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum destructivum species complex
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Genomic context

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See CH63R_04134 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_030956.1 (1885695..1888054, complement)

Chromosome 3 - NC_030956.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene F-box domain-containing protein Neighboring gene Ctd kinase subunit alpha Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030956.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Glycogen synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_030956.1 Reference assembly

    Range
    1885695..1888054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018299109.1 → XP_018160355.1  Glycogen synthase [Colletotrichum higginsianum IMI 349063]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A4T0W4L0, H1UWL5
    Conserved Domains (1) summary
    pfam05693
    Location:26 → 670
    Glycogen_syn; Glycogen synthase
Nucleotide Protein
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