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Ubtd2 ubiquitin domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 287178, updated on 2-Nov-2024

Summary

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Official Symbol
Ubtd2provided by RGD
Official Full Name
ubiquitin domain containing 2provided by RGD
Primary source
RGD:1305506
See related
EnsemblRapid:ENSRNOG00000004137 AllianceGenome:RGD:1305506
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305506
Summary
Orthologous to human UBTD2 (ubiquitin domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 74.9), Testes (RPKM 73.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ubtd2 in Genome Data Viewer
Location:
10q12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (17542008..17604548)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (17037716..17100263)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (17327250..17392431)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 134, pseudogene 1 Neighboring gene uncharacterized LOC120095060 Neighboring gene SH3 and PX domains 2B Neighboring gene EF-hand calcium binding domain 9 Neighboring gene serine/threonine kinase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. miR-141-3p affects β-catenin signaling and apoptosis by targeting Ubtd2 in rats with anorectal malformations. Wang CY, et al. Ann N Y Acad Sci, 2022 Dec. PMID 36328940

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. miR-141-3p affects beta-catenin signaling and apoptosis by targeting Ubtd2 in rats with anorectal malformations.
    Title: miR-141-3p affects β-catenin signaling and apoptosis by targeting Ubtd2 in rats with anorectal malformations.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

General protein information

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Preferred Names
ubiquitin domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398573.1 → NP_001385502.1  ubiquitin domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A0A8I5ZW20
    Related
    ENSRNOP00000084596.2, ENSRNOT00000115802.2
    Conserved Domains (2) summary
    cd17121
    Location:151 → 225
    Ubl_UBTD2; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 2 (UBTD2)
    pfam16455
    Location:30 → 132
    UBD; Ubiquitin-binding domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    17542008..17604548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087138.2 → XP_038943066.1  ubiquitin domain-containing protein 2 isoform X6

    Conserved Domains (1) summary
    pfam16455
    Location:30 → 103
    UBD; Ubiquitin-binding domain

  2. XM_039087136.2 → XP_038943064.1  ubiquitin domain-containing protein 2 isoform X4

    Conserved Domains (1) summary
    pfam16455
    Location:30 → 102
    UBD; Ubiquitin-binding domain

  3. XM_039087133.2 → XP_038943061.1  ubiquitin domain-containing protein 2 isoform X2

    Conserved Domains (2) summary
    cd17121
    Location:72 → 146
    Ubl_UBTD2; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 2 (UBTD2)
    pfam16455
    Location:24 → 53
    UBD; Ubiquitin-binding domain

  4. XM_039087132.2 → XP_038943060.1  ubiquitin domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A6HDF2
    Conserved Domains (2) summary
    cd17121
    Location:107 → 181
    Ubl_UBTD2; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 2 (UBTD2)
    pfam16455
    Location:1 → 88
    UBD; Ubiquitin-binding domain

  5. XM_017597618.3 → XP_017453107.1  ubiquitin domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A6HDF2
    Conserved Domains (2) summary
    cd17121
    Location:107 → 181
    Ubl_UBTD2; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 2 (UBTD2)
    pfam16455
    Location:1 → 88
    UBD; Ubiquitin-binding domain

  6. XM_039087134.1 → XP_038943062.1  ubiquitin domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    cd17121
    Location:71 → 145
    Ubl_UBTD2; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 2 (UBTD2)
    pfam16455
    Location:14 → 52
    UBD; Ubiquitin-binding domain

  7. XM_039087135.2 → XP_038943063.1  ubiquitin domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    cd17121
    Location:71 → 145
    Ubl_UBTD2; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 2 (UBTD2)
    pfam16455
    Location:14 → 52
    UBD; Ubiquitin-binding domain

  8. XM_039087137.2 → XP_038943065.1  ubiquitin domain-containing protein 2 isoform X5

    Conserved Domains (2) summary
    cd17121
    Location:51 → 125
    Ubl_UBTD2; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 2 (UBTD2)
    pfam16455
    Location:3 → 32
    UBD; Ubiquitin-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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