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ANIA_07135 rhamnogalacturonate lyase B [ Aspergillus nidulans FGSC A4 ]

Gene ID: 2870208, updated on 31-Oct-2024

Summary

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Gene symbol
ANIA_07135
Gene description
rhamnogalacturonate lyase B
Locus tag
ANIA_07135
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus nidulans FGSC A4 (strain: FGSC A4)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Nidulantes
Old locus tag
AN7135.4; AN7135.2
Orthologs
Aspergillus fumigatus all
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Genomic context

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See ANIA_07135 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
11
Sequence:
Chromosome: IV; NC_066260.1 (886773..888910, complement)

Chromosome IV - NC_066260.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene glycine decarboxylase subunit P Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066260.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Wortman JR, et al. Fungal Genet Biol, 2009 Mar. PMID 19146970, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
rhamnogalacturonate lyase B
XP_664739.1
  • transcript_id=CADANIAT00000323

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_066260.1 Reference assembly

    Range
    886773..888910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_659647.1 → XP_664739.1  TPA: rhamnogalacturonate lyase B [Aspergillus nidulans FGSC A4]

    See identical proteins and their annotated locations for XP_664739.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    C8VD91, Q1HFS0, Q5AX45
    Conserved Domains (3) summary
    pfam09284
    Location:22 → 270
    RhgB_N; Rhamnogalacturonan lyase B, N-terminal
    pfam14683
    Location:361 → 525
    CBM-like; Polysaccharide lyase family 4, domain III
    pfam14686
    Location:276 → 352
    fn3_3; Polysaccharide lyase family 4, domain II
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5AX45.1

Gene LinkOut

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Research Materials