ddx55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ddx55provided by ZNC
Official Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55provided by ZNC
Primary source: ZFIN:ZDB-GENE-021212-1
See related: Ensembl:ENSDARG00000009864 AllianceGenome:ZFIN:ZDB-GENE-021212-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc32a12; kiaa1595; chunp6861; wu:fc32a12
Summary: Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be active in nucleolus. Orthologous to human DDX55 (DEAD-box helicase 55). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (3397871..3416228, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (3397553..3415924, complement)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables RNA helicase activity	IEA Inferred from Electronic Annotation more info
enables helicase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: ATP-dependent RNA helicase DDX55

Names: DEAD box protein 55

NP_775336.2

EC 3.6.4.13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_173229.2 → NP_775336.2 ATP-dependent RNA helicase DDX55

Status: VALIDATED

Source sequence(s)

CU570980, EH441837, EH467724, EH508850, EH534985

UniProtKB/Swiss-Prot

Q6PBZ0, Q8JHJ2

UniProtKB/TrEMBL

A0A8M1PBV8, F1QZG8

Related

ENSDARP00000020323.5, ENSDART00000005168.6

Conserved Domains (4) summary

COG0513
Location:15 → 517

SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]

cd00268
Location:16 → 224

DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

pfam00271
Location:252 → 363

Helicase_C; Helicase conserved C-terminal domain

pfam13959
Location:403 → 462

DUF4217; Domain of unknown function (DUF4217)