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MIR4290HG MIR4290 host gene [ Homo sapiens (human) ]

Gene ID: 286370, updated on 10-Oct-2023

Summary

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Official Symbol
MIR4290HGprovided by HGNC
Official Full Name
MIR4290 host geneprovided by HGNC
Primary source
HGNC:HGNC:27861
See related
Ensembl:ENSG00000227555 AllianceGenome:HGNC:27861
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See MIR4290HG in Genome Data Viewer
Location:
9q22.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (90020654..90041499, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (102185770..102206617, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (92782936..92803781, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28561 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108797 Neighboring gene uncharacterized LOC101927847 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28562 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28563 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28564 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28566 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:92776129-92777328 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28567 Neighboring gene NANOG hESC enhancer GRCh37_chr9:92796466-92797003 Neighboring gene microRNA 4290 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:92822514-92823713 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:92824519-92825718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28568 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108944 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28569 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20019 Neighboring gene interleukin 6 receptor pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92912157-92912789 Neighboring gene uncharacterized LOC105376142

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038882.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161629, BC039331
    Related
    ENST00000426593.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    90020654..90041499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    102185770..102206617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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