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LINC02860 long intergenic non-protein coding RNA 2860 [ Homo sapiens (human) ]

Gene ID: 285941, updated on 5-Mar-2024

Summary

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Official Symbol
LINC02860provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2860provided by HGNC
Primary source
HGNC:HGNC:22364
See related
Ensembl:ENSG00000222004 AllianceGenome:HGNC:22364
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C7orf71
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
7p15.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (26637871..26647272)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (26773589..26782993)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (26677490..26686891)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3095 Neighboring gene uncharacterized LOC101928077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26653756-26654272 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:26657384-26658583 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26669689-26670190 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26670191-26670690 Neighboring gene VISTA enhancer hs296 Neighboring gene src kinase associated phosphoprotein 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:26774177-26774499 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:26823633-26824297 Neighboring gene uncharacterized LOC124901606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26897041-26897642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25791 Neighboring gene ribosomal protein L7a pseudogene 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Heritability and genetic association analysis of cognition in the Diabetes Heart Study. Cox AJ, et al. Neurobiol Aging, 2014 Aug. PMID 24684796, Free PMC Article
  2. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. Wistow G, et al. Mol Vis, 2002 Jun 15. PMID 12107410
  3. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Heritability and genetic association analysis of cognition in the Diabetes Heart Study.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_161201.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC003999
    Related
    ENST00000409974.7

  2. NR_161202.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC003999

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    26637871..26647272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    26773589..26782993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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