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TPT1P4 TPT1 pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 285741, updated on 17-Sep-2024

Summary

Official Symbol
TPT1P4provided by HGNC
Official Full Name
TPT1 pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:49298
See related
AllianceGenome:HGNC:49298
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See TPT1P4 in Genome Data Viewer
Location:
6q24.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (144200238..144201079, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (145392861..145393702, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (144521375..144522216, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak6182 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17638 Neighboring gene mitochondrial ribosomal protein L42 pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:144507610-144508110 Neighboring gene Sharpr-MPRA regulatory region 5218 Neighboring gene syntaxin 11 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17639 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25213 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144537315-144537779 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144550475-144550694 Neighboring gene tRNA-Leu (anticodon TAA) 1-1 Neighboring gene MPRA-validated peak6183 silencer Neighboring gene MPRA-validated peak6184 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:144586575-144587308 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:144587309-144588042 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25214 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17641 Neighboring gene uncharacterized LOC124901418 Neighboring gene utrophin

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022331.3 

    Range
    101..942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    144200238..144201079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    145392861..145393702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)