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LOC285638 uncharacterized LOC285638 [ Homo sapiens (human) ]

Gene ID: 285638, updated on 17-Sep-2024

Summary

Gene symbol
LOC285638
Gene description
uncharacterized LOC285638
See related
Ensembl:ENSG00000249476
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC285638 in Genome Data Viewer
Location:
5q21.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (109237134..109326369, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (109740595..109829825, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (108572835..108662070, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene FER tyrosine kinase Neighboring gene gap junction protein alpha 1 pseudogene 1 Neighboring gene MPRA-validated peak5410 silencer Neighboring gene uncharacterized LOC124901040 Neighboring gene NANOG hESC enhancer GRCh37_chr5:108506215-108506770 Neighboring gene MPRA-validated peak5411 silencer Neighboring gene MPRA-validated peak5412 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr5:108533816-108534023 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:108626441-108626942 Neighboring gene Sharpr-MPRA regulatory region 6746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22879 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22880 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22881 Neighboring gene praja ring finger ubiquitin ligase 2 Neighboring gene uncharacterized LOC105379117 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22882 Neighboring gene Sharpr-MPRA regulatory region 13215

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149040.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008467, AC116428
    Related
    ENST00000512693.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    109237134..109326369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    109740595..109829825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)