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LINC01097 long intergenic non-protein coding RNA 1097 [ Homo sapiens (human) ]

Gene ID: 285547, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01097provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1097provided by HGNC
Primary source
HGNC:HGNC:27738
See related
Ensembl:ENSG00000281202 AllianceGenome:HGNC:27738
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4p15.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (13526319..13531417, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (13506007..13511103, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (13527943..13533041, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory regions 1971 and 3941 Neighboring gene uncharacterized LOC105374495 Neighboring gene uncharacterized LOC124900669 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:13524914-13526113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21325 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:13548258-13548758 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:13548759-13549259 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15288 Neighboring gene Sharpr-MPRA regulatory region 12016 Neighboring gene long intergenic non-protein coding RNA 1096 Neighboring gene NK3 homeobox 2 Neighboring gene biorientation of chromosomes in cell division 1 like 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:13600786-13601286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:13601287-13601787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21326 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15289 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:13628778-13629508

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034054.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK096368, BC035722
    Related
    ENST00000627163.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    13526319..13531417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    13506007..13511103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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