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GASK1B-AS1 GASK1B antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 285505, updated on 10-Oct-2023

Summary

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Official Symbol
GASK1B-AS1provided by HGNC
Official Full Name
GASK1B antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53132
See related
Ensembl:ENSG00000248429 AllianceGenome:HGNC:53132
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM198B-AS1
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Genomic context

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Location:
4q32.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (158170752..158202877)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (161522968..161555083)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (159091904..159124029)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377509 Neighboring gene GATA motif-containing MPRA enhancer 19 Neighboring gene ribosomal protein L6 pseudogene 11 Neighboring gene uncharacterized LOC124900801 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:158936869-158937025 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:158965685-158966884 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:159015278-159016477 Neighboring gene golgi associated kinase 1B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:159091660-159092180 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:159092354-159093553 Neighboring gene uncharacterized LOC101928007 Neighboring gene NUDT19 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:159131026-159131580 Neighboring gene Sharpr-MPRA regulatory region 4077 Neighboring gene transmembrane protein 144 Neighboring gene NANOG hESC enhancer GRCh37_chr4:159166017-159166518 Neighboring gene NANOG hESC enhancer GRCh37_chr4:159195233-159195734 Neighboring gene AIDA pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LncRNAs expression profiling in normal ovary, benign ovarian cyst and malignant epithelial ovarian cancer. Wang H, et al. Sci Rep, 2016 Dec 12. PMID 27941916, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Markers

Other Names

  • FAM198B antisense RNA 1

Clone Names

  • FLJ26212, FLJ44278

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147407.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098679
    Related
    ENST00000503611.5

  2. NR_147408.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098679

  3. NR_147409.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098679

  4. NR_147410.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098679

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    158170752..158202877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    161522968..161555083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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