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ytfR galactofuranose ABC transporter putative ATP binding subunit [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 2847725, updated on 19-Sep-2024

Summary

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Official Symbol
ytfR
Official Full Name
galactofuranose ABC transporter putative ATP binding subunit
Primary source
ECOCYC:EG12518
Locus tag
b4485
See related
ASAP:ABE-0174118
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
b4228; b4229; ECK4224; ytfS
Summary
Putative YjfF-YtfTRQ ABC transport system. [More information is available at EcoGene: EG12518]. YtfR is an ATP-binding component of a predicted sugar ABC transporter. [More information is available at EcoCyc: EG12518].
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Genomic context

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Sequence:
NC_000913.3 (4451058..4452560)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene inorganic pyrophosphatase Neighboring gene galactofuranose ABC transporter periplasmic binding protein Neighboring gene galactofuranose ABC transporter putative membrane subunit YtfT Neighboring gene galactofuranose ABC transporter putative membrane subunit YjtF Neighboring gene fructose-1,6-bisphosphatase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Furanose-specific sugar transport: characterization of a bacterial galactofuranose-binding protein. Horler RS, et al. J Biol Chem, 2009 Nov 6. PMID 19744923, Free PMC Article
  2. Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. Monsieurs P, et al. J Mol Evol, 2005 Apr. PMID 15883881
  3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
  4. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292
  5. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ABC-type D-galactofuranose transporter IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding ISA
Inferred from Sequence Alignment
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity ISA
Inferred from Sequence Alignment
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-galactonate transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in hexose import across plasma membrane NAS
Non-traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within transmembrane transport RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
galactofuranose ABC transporter putative ATP binding subunit
YP_026286.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4451058..4452560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_026286.1 galactofuranose ABC transporter putative ATP binding subunit [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_026286.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7EIT5
    Conserved Domains (1) summary
    COG1129
    Location:2 → 500
    MglA; ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Nucleotide Protein
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