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TUFT1 tuftelin 1 [ Bos taurus (domestic cattle) ]

Gene ID: 282104, updated on 4-Oct-2024

Summary

Official Symbol
TUFT1provided by VGNC
Official Full Name
tuftelin 1provided by VGNC
Primary source
VGNC:VGNC:36518
See related
BGD:BT21977; Ensembl:ENSBTAG00000017566
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See TUFT1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (19199740..19250792, complement)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 27 Neighboring gene uncharacterized LOC112445949 Neighboring gene ribosomal protein S27-like pseudogene Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene calponin 3, acidic pseudogene Neighboring gene small nucleolar RNA SNORA11 Neighboring gene cingulin Neighboring gene uncharacterized LOC132344837

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174479.2NP_776904.1  tuftelin

    See identical proteins and their annotated locations for NP_776904.1

    Status: PROVISIONAL

    Source sequence(s)
    AF105228
    UniProtKB/Swiss-Prot
    O97683, P27628
    UniProtKB/TrEMBL
    F1MRE2
    Related
    ENSBTAP00000043710.1, ENSBTAT00000046403.2
    Conserved Domains (3) summary
    pfam06364
    Location:162239
    DUF1068; Protein of unknown function (DUF1068)
    cd16269
    Location:322332
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:206349
    GBP_C; Guanylate-binding protein, C-terminal domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    19199740..19250792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024984736.2XP_024840504.1  tuftelin isoform X4

    UniProtKB/TrEMBL
    Q32L07
    Conserved Domains (1) summary
    cl25732
    Location:68289
    SMC_N; RecF/RecN/SMC N terminal domain
  2. XM_005203838.5XP_005203895.1  tuftelin isoform X2

    UniProtKB/TrEMBL
    A0A3Q1MGN7, Q32L07
    Related
    ENSBTAP00000069749.2, ENSBTAT00000074435.2
    Conserved Domains (3) summary
    pfam06364
    Location:113214
    DUF1068; Protein of unknown function (DUF1068)
    cd16269
    Location:297307
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:181324
    GBP_C; Guanylate-binding protein, C-terminal domain
  3. XM_010803000.3XP_010801302.1  tuftelin isoform X5

    UniProtKB/TrEMBL
    G3N071
    Conserved Domains (3) summary
    pfam06364
    Location:110187
    DUF1068; Protein of unknown function (DUF1068)
    cd16269
    Location:270280
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:154297
    GBP_C; Guanylate-binding protein, C-terminal domain
  4. XM_005203839.4XP_005203896.1  tuftelin isoform X3

    UniProtKB/TrEMBL
    E1B7J6, F1MRE2
    Related
    ENSBTAP00000048998.2, ENSBTAT00000057204.4
    Conserved Domains (3) summary
    pfam06364
    Location:132209
    DUF1068; Protein of unknown function (DUF1068)
    cd16269
    Location:292302
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:176319
    GBP_C; Guanylate-binding protein, C-terminal domain
  5. XM_010802999.3XP_010801301.1  tuftelin isoform X1

    UniProtKB/TrEMBL
    F1MRE2, F1MYM6
    Related
    ENSBTAP00000023368.5, ENSBTAT00000023368.7
    Conserved Domains (3) summary
    pfam06364
    Location:140217
    DUF1068; Protein of unknown function (DUF1068)
    cd16269
    Location:300310
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:184327
    GBP_C; Guanylate-binding protein, C-terminal domain