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Spata31f3 spermatogenesis associated 31 subfamily F member 3 [ Mus musculus (house mouse) ]

Gene ID: 277773, updated on 2-Nov-2024

Summary

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Official Symbol
Spata31f3provided by MGI
Official Full Name
spermatogenesis associated 31 subfamily F member 3provided by MGI
Primary source
MGI:MGI:2679716
See related
Ensembl:ENSMUSG00000050141 AllianceGenome:MGI:2679716
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam205c; FAM205CP; 4931430D02
Summary
Predicted to be located in membrane. Orthologous to human SPATA31F3 (SPATA31 subfamily F member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 84.8) See more
Orthologs
human all
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Genomic context

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See Spata31f3 in Genome Data Viewer
Location:
4 A5; 4 22.88 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (42867999..42874234, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (42868003..42874246, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930578G10 gene Neighboring gene predicted gene 9615 Neighboring gene spermatogenesis associated 31 subfamily F member 1A Neighboring gene STARR-seq mESC enhancer starr_10042 Neighboring gene PHD finger protein 24 Neighboring gene predicted gene, 52697 Neighboring gene STARR-positive B cell enhancer ABC_E660 Neighboring gene DnaJ heat shock protein family (Hsp40) member B5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

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Homology

Clone Names

  • MGC58387

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein SPATA31F3
Names
family with sequence similarity 205, member C
protein FAM205C
protein FAM205CP homolog
transmembrane protein ENSP00000340100 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356379.2 → NP_001343308.1  protein SPATA31F3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL772334
    Consensus CDS
    CCDS89730.1
    UniProtKB/Swiss-Prot
    Q80YD3, Q8C5W8
    Related
    ENSMUSP00000103612.2, ENSMUST00000107978.2
    Conserved Domains (1) summary
    pfam15371
    Location:52 → 123
    DUF4599; Domain of unknown function (DUF4599)

  2. NM_001356380.2 → NP_001343309.1  protein SPATA31F3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL772334
    UniProtKB/TrEMBL
    Q3V0J3

  3. NM_001425861.1 → NP_001412790.1  protein SPATA31F3 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL772334

  4. NM_001425862.1 → NP_001412791.1  protein SPATA31F3 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL772334

  5. NM_001425863.1 → NP_001412792.1  protein SPATA31F3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL772334
    UniProtKB/TrEMBL
    Q3V0J3

  6. NM_177785.6 → NP_808453.1  protein SPATA31F3 isoform 1

    See identical proteins and their annotated locations for NP_808453.1

    Status: VALIDATED

    Source sequence(s)
    AL772334
    Consensus CDS
    CCDS18082.1
    UniProtKB/Swiss-Prot
    Q80YD3
    Related
    ENSMUSP00000060318.5, ENSMUST00000055944.11
    Conserved Domains (1) summary
    pfam15371
    Location:55 → 123
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    42867999..42874234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q80YD3.1 GenPept UniProtKB/Swiss-Prot:Q80YD3

Gene LinkOut

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