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SPSK_03950 pre-mRNA-processing factor 6 [ Sporothrix schenckii 1099-18 ]

Gene ID: 27666042, updated on 17-May-2024

Summary

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Gene symbol
SPSK_03950
Gene description
pre-mRNA-processing factor 6
Locus tag
SPSK_03950
See related
FungiDB:SPSK_03950; VEuPathDB:SPSK_03950
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sporothrix schenckii 1099-18 (strain: 1099-18, nat-host: Homo sapiens, culture-collection: ATCC:MYA-4821)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Sporothrix
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Genomic context

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See SPSK_03950 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_015971148.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene casein kinase II subunit beta Neighboring gene uncharacterized protein Neighboring gene peroxin 23-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015971148.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis. Teixeira Mde M, et al. Eukaryot Cell, 2015 Feb. PMID 25480940, Free PMC Article
  2. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. Teixeira MM, et al. BMC Genomics, 2014 Oct 29. PMID 25351875, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 6
XP_016585839.1
  • identified by sequence similarity

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_015971148.1 Reference assembly

    Range
    4121262..4124195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016730765.1 → XP_016585839.1  pre-mRNA-processing factor 6 [Sporothrix schenckii 1099-18]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0F2M0C3, U7PWN8
    Conserved Domains (5) summary
    sd00006
    Location:746 → 776
    TPR; TPR repeat [structural motif]
    pfam06424
    Location:12 → 219
    PRP1_N; PRP1 splicing factor, N-terminal
    pfam13428
    Location:648 → 689
    TPR_14; Tetratricopeptide repeat
    pfam13432
    Location:751 → 815
    TPR_16; Tetratricopeptide repeat
    pfam14559
    Location:657 → 721
    TPR_19; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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