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SPSK_01990 small nuclear ribonucleoprotein D2 [ Sporothrix schenckii 1099-18 ]

Gene ID: 27664165, updated on 17-May-2024

Summary

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Gene symbol
SPSK_01990
Gene description
small nuclear ribonucleoprotein D2
Locus tag
SPSK_01990
See related
FungiDB:SPSK_01990; VEuPathDB:SPSK_01990
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sporothrix schenckii 1099-18 (strain: 1099-18, nat-host: Homo sapiens, culture-collection: ATCC:MYA-4821)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Sporothrix
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Genomic context

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See SPSK_01990 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
4

NW_015971143.1Genomic Context describing neighboring genes Neighboring gene cohesin loading factor subunit SCC2 Neighboring gene uncharacterized protein Neighboring gene tRNA-Lys Neighboring gene threonyl-tRNA synthetase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015971143.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis. Teixeira Mde M, et al. Eukaryot Cell, 2015 Feb. PMID 25480940, Free PMC Article
  2. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. Teixeira MM, et al. BMC Genomics, 2014 Oct 29. PMID 25351875, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein D2
XP_016589844.1
  • identified by sequence similarity

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_015971143.1 Reference assembly

    Range
    1019938..1020506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016728888.1 → XP_016589844.1  small nuclear ribonucleoprotein D2 [Sporothrix schenckii 1099-18]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0F2MBT8, U7PLK2
    Conserved Domains (1) summary
    cd01720
    Location:30 → 103
    Sm_D2; Sm protein D2
Nucleotide Protein
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