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SPSK_00733 splicing factor U2AF 65 kDa subunit [ Sporothrix schenckii 1099-18 ]

Gene ID: 27662958, updated on 17-May-2024

Summary

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Gene symbol
SPSK_00733
Gene description
splicing factor U2AF 65 kDa subunit
Locus tag
SPSK_00733
See related
FungiDB:SPSK_00733; VEuPathDB:SPSK_00733
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sporothrix schenckii 1099-18 (strain: 1099-18, nat-host: Homo sapiens, culture-collection: ATCC:MYA-4821)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Sporothrix
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Genomic context

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See SPSK_00733 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_015971149.1Genomic Context describing neighboring genes Neighboring gene U6 snRNA-associated Sm-like protein LSm2 Neighboring gene DNA cross-link repair 1A protein Neighboring gene N-glucosyllase/DNA lyase Neighboring gene splicing factor 3B subunit 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015971149.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis. Teixeira Mde M, et al. Eukaryot Cell, 2015 Feb. PMID 25480940, Free PMC Article
  2. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. Teixeira MM, et al. BMC Genomics, 2014 Oct 29. PMID 25351875, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly-pyrimidine tract binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA 3'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2AF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor U2AF 65 kDa subunit
XP_016584299.1
  • identified by sequence similarity

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_015971149.1 Reference assembly

    Range
    1392247..1394255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016727681.1 → XP_016584299.1  splicing factor U2AF 65 kDa subunit [Sporothrix schenckii 1099-18]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0F2LVZ2, U7PME6
    Conserved Domains (4) summary
    cd12231
    Location:415 → 491
    RRM2_U2AF65; RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
    cd12232
    Location:523 → 611
    RRM3_U2AF65; RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
    TIGR01642
    Location:147 → 623
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cl17169
    Location:284 → 353
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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