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SPSK_00668 splicing factor 3B subunit 1 [ Sporothrix schenckii 1099-18 ]

Gene ID: 27662895, updated on 17-May-2024

Summary

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Gene symbol
SPSK_00668
Gene description
splicing factor 3B subunit 1
Locus tag
SPSK_00668
See related
FungiDB:SPSK_00668; VEuPathDB:SPSK_00668
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sporothrix schenckii 1099-18 (strain: 1099-18, nat-host: Homo sapiens, culture-collection: ATCC:MYA-4821)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Sporothrix
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Genomic context

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See SPSK_00668 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_015971149.1Genomic Context describing neighboring genes Neighboring gene splicing factor U2AF 65 kDa subunit Neighboring gene N-glucosyllase/DNA lyase Neighboring gene S-adenosylmethionine synthetase Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015971149.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis. Teixeira Mde M, et al. Eukaryot Cell, 2015 Feb. PMID 25480940, Free PMC Article
  2. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. Teixeira MM, et al. BMC Genomics, 2014 Oct 29. PMID 25351875, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 1
XP_016584301.1
  • identified by sequence similarity

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_015971149.1 Reference assembly

    Range
    1396478..1400239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016727618.1 → XP_016584301.1  splicing factor 3B subunit 1 [Sporothrix schenckii 1099-18]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0F2LYQ2, U7PMY1
    Conserved Domains (4) summary
    COG5181
    Location:409 → 1250
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    pfam08920
    Location:266 → 390
    SF3b1; Splicing factor 3B subunit 1
    pfam13513
    Location:939 → 994
    HEAT_EZ; HEAT-like repeat
    sd00044
    Location:802 → 826
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases