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LOC27206936 testis-specific chromodomain protein Y 2 [ Drosophila simulans ]

Gene ID: 27206936, updated on 10-May-2024

Summary

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Gene symbol
LOC27206936
Gene description
testis-specific chromodomain protein Y 2
Locus tag
Dsimw501_GD27086
See related
EnsemblRapid:LOC27206936
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila simulans
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
rhi; rhino; GD27086; GD27086-PA
Orthologs
fruit fly all
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Genomic context

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See LOC27206936 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Prin_Dsim_3.1 (GCF_016746395.2) 2R NC_052521.2 (14860768..14866093, complement)
102 previous assembly Prin_Dsim_3.0 (GCF_016746395.1) 2R NC_052521.1 (14860765..14866097, complement)

Chromosome 2R - NC_052521.2Genomic Context describing neighboring genes Neighboring gene mucin-5AC Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene uncharacterized LOC27208753 Neighboring gene chromobox protein homolog 1 Neighboring gene neuropeptide CCHamide-1 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. Vermaak D, et al. PLoS Genet, 2005 Jul. PMID 16103923, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
testis-specific chromodomain protein Y 2
Names
Dsim\GD27086
Dsim\GD27086-PA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila simulans Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dsim_3.1

Genomic

  1. NC_052521.2 Reference Prin_Dsim_3.1

    Range
    14860768..14866093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016182708.3 → XP_016028260.1  testis-specific chromodomain protein Y 2

    UniProtKB/TrEMBL
    Q49BH8, Q49BI5
    Related
    XP_016028260.1, XM_016182708.3
    Conserved Domains (1) summary
    cd00024
    Location:23 → 72
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
Nucleotide Protein Strain
Heading Accession and Version

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