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Ankdd1b ankyrin repeat and death domain containing 1B [ Mus musculus (house mouse) ]

Gene ID: 271144, updated on 2-Nov-2024

Summary

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Official Symbol
Ankdd1bprovided by MGI
Official Full Name
ankyrin repeat and death domain containing 1Bprovided by MGI
Primary source
MGI:MGI:2444730
See related
Ensembl:ENSMUSG00000047117 AllianceGenome:MGI:2444730
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9330128J19Rik
Summary
Predicted to be involved in signal transduction. Orthologous to human ANKDD1B (ankyrin repeat and death domain containing 1B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in stomach adult (RPKM 1.5), cerebellum adult (RPKM 1.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Ankdd1b in Genome Data Viewer
Location:
13 D1; 13 50.56 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (96552642..96607766, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (96416134..96471258, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene synaptic vesicle glycoprotein 2c Neighboring gene STARR-seq mESC enhancer starr_35337 Neighboring gene predicted gene 29543 Neighboring gene STARR-seq mESC enhancer starr_35340 Neighboring gene STARR-seq mESC enhancer starr_35341 Neighboring gene STARR-seq mESC enhancer starr_35342 Neighboring gene STARR-seq mESC enhancer starr_35344 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:97157941-97158317 Neighboring gene SNF8, ESCRT-II complex subunit, homolog pseudogene Neighboring gene POC5 centriolar protein Neighboring gene STARR-positive B cell enhancer ABC_E1884 Neighboring gene STARR-positive B cell enhancer ABC_E2418 Neighboring gene polymerase (DNA directed), kappa Neighboring gene ceramide transporter 1 Neighboring gene predicted gene, 46436

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat and death domain-containing protein 1B
Names
ankyrin repeat and death domain-containing protein ENSP00000345065 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001042714.1 → NP_001036179.1  ankyrin repeat and death domain-containing protein 1B isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK033386, BC112417
    UniProtKB/Swiss-Prot
    Q14DN9, Q8BZP7
    Conserved Domains (4) summary
    cd00204
    Location:32 → 159
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:110 → 202
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:71 → 126
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:105 → 136
    ANK; ANK repeat [structural motif]

  2. NM_001369169.1 → NP_001356098.1  ankyrin repeat and death domain-containing protein 1B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC125534
    Consensus CDS
    CCDS88501.1
    UniProtKB/Swiss-Prot
    Q14DN9, Q8BZP7
    Related
    ENSMUSP00000061643.6, ENSMUST00000055607.13
    Conserved Domains (3) summary
    PHA02876
    Location:63 → 413
    PHA02876; ankyrin repeat protein; Provisional
    sd00045
    Location:194 → 225
    ANK; ANK repeat [structural motif]
    cl14633
    Location:466 → 540
    DD; Death Domain Superfamily of protein-protein interaction domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    96552642..96607766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158064.1 → XP_036013957.1  ankyrin repeat and death domain-containing protein 1B isoform X4

    Conserved Domains (2) summary
    PHA02876
    Location:63 → 413
    PHA02876; ankyrin repeat protein; Provisional
    sd00045
    Location:194 → 225
    ANK; ANK repeat [structural motif]

  2. XM_006517683.3 → XP_006517746.1  ankyrin repeat and death domain-containing protein 1B isoform X2

    UniProtKB/Swiss-Prot
    Q14DN9, Q8BZP7
    Conserved Domains (4) summary
    sd00045
    Location:194 → 225
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:265 → 357
    Ank_2; Ankyrin repeats (3 copies)
    cl14633
    Location:433 → 475
    DD; Death Domain Superfamily of protein-protein interaction domains
    cl39094
    Location:68 → 289
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_006517681.3 → XP_006517744.1  ankyrin repeat and death domain-containing protein 1B isoform X1

    UniProtKB/Swiss-Prot
    Q14DN9, Q8BZP7
    Conserved Domains (3) summary
    PHA02876
    Location:63 → 413
    PHA02876; ankyrin repeat protein; Provisional
    sd00045
    Location:194 → 225
    ANK; ANK repeat [structural motif]
    cl14633
    Location:466 → 508
    DD; Death Domain Superfamily of protein-protein interaction domains

  4. XM_006517685.3 → XP_006517748.1  ankyrin repeat and death domain-containing protein 1B isoform X5

    Conserved Domains (3) summary
    PHA02876
    Location:4 → 291
    PHA02876; ankyrin repeat protein; Provisional
    sd00045
    Location:72 → 103
    ANK; ANK repeat [structural motif]
    cl14633
    Location:344 → 386
    DD; Death Domain Superfamily of protein-protein interaction domains

  5. XM_006517684.3 → XP_006517747.1  ankyrin repeat and death domain-containing protein 1B isoform X3

    Conserved Domains (3) summary
    PHA02876
    Location:13 → 324
    PHA02876; ankyrin repeat protein; Provisional
    sd00045
    Location:105 → 136
    ANK; ANK repeat [structural motif]
    cl14633
    Location:377 → 419
    DD; Death Domain Superfamily of protein-protein interaction domains

RNA

  1. XR_873766.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q14DN9.3 GenPept UniProtKB/Swiss-Prot:Q14DN9

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