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Frmpd2 FERM and PDZ domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 268729, updated on 2-Nov-2024

Summary

Official Symbol
Frmpd2provided by MGI
Official Full Name
FERM and PDZ domain containing 2provided by MGI
Primary source
MGI:MGI:2685472
See related
Ensembl:ENSMUSG00000108841 AllianceGenome:MGI:2685472
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm626; Gm1582
Summary
Predicted to enable 1-phosphatidylinositol binding activity. Predicted to be involved in bicellular tight junction assembly. Predicted to be located in basolateral plasma membrane and bicellular tight junction. Is expressed in central nervous system; ganglia; and retina. Orthologous to human FRMPD2 (FERM and PDZ domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Frmpd2 in Genome Data Viewer
Location:
14 B; 14 20.46 cM
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (33193475..33297226)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (33483501..33575269)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 22 Neighboring gene predicted gene, 41130 Neighboring gene STARR-seq mESC enhancer starr_36351 Neighboring gene mitogen-activated protein kinase 8 Neighboring gene STARR-seq mESC enhancer starr_36353 Neighboring gene protein tyrosine phosphatase, non-receptor type 20 Neighboring gene predicted gene, 26228

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in basolateral plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in bicellular tight junction ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
FERM and PDZ domain-containing protein 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    33193475..33297226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017316244.2XP_017171733.1  FERM and PDZ domain-containing protein 2 isoform X2

    UniProtKB/Swiss-Prot
    A0A140LI67
    Conserved Domains (6) summary
    smart00228
    Location:9301018
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:334538
    B41; Band 4.1 homologues
    cd00992
    Location:775859
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17171
    Location:534635
    PH-like; Pleckstrin homology-like domain
    cl21453
    Location:6188
    PKc_like; Protein Kinases, catalytic domain
    cl28922
    Location:329422
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
  2. XM_036158980.1XP_036014873.1  FERM and PDZ domain-containing protein 2 isoform X1

    UniProtKB/Swiss-Prot
    A0A140LI67
    Related
    ENSMUSP00000146693.2, ENSMUST00000208577.2
    Conserved Domains (6) summary
    smart00228
    Location:9301018
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:334538
    B41; Band 4.1 homologues
    cd00992
    Location:775859
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17171
    Location:534635
    PH-like; Pleckstrin homology-like domain
    cl21453
    Location:6188
    PKc_like; Protein Kinases, catalytic domain
    cl28922
    Location:329422
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
  3. XM_036158982.1XP_036014875.1  FERM and PDZ domain-containing protein 2 isoform X3

    UniProtKB/Swiss-Prot
    A0A140LI67
    Conserved Domains (6) summary
    smart00228
    Location:9121000
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:334538
    B41; Band 4.1 homologues
    cd00992
    Location:757841
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17171
    Location:534635
    PH-like; Pleckstrin homology-like domain
    cl21453
    Location:6188
    PKc_like; Protein Kinases, catalytic domain
    cl28922
    Location:329422
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold