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SOCS2P2 suppressor of cytokine signaling 2 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 266701, updated on 17-Sep-2024

Summary

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Official Symbol
SOCS2P2provided by HGNC
Official Full Name
suppressor of cytokine signaling 2 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:19330
See related
AllianceGenome:HGNC:19330
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SOCS2P2 in Genome Data Viewer
Location:
22q11.22
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (22169956..22171602, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (22583489..22585135, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (22524349..22525988, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr22:22482353-22482868 Neighboring gene immunoglobulin lambda locus Neighboring gene ABHD17A pseudogene 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:22510059-22510201 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18721 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:22518113-22518300 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18722 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18723 Neighboring gene immunoglobulin lambda variable 4-60 Neighboring gene immunoglobulin lambda variable (IV)-59 (pseudogene) Neighboring gene immunoglobulin lambda variable (V)-58 (pseudogene)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. One-megabase sequence analysis of the human immunoglobulin lambda gene locus. Kawasaki K, et al. Genome Res, 1997 Mar. PMID 9074928

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000002.1 

    Range
    148338..149977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    22169956..22171602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    22583489..22585135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002377.1: Suppressed sequence

    Description
    NG_002377.1: This RefSeq was permanently suppressed because this gene is now included in the immunoglobulin lambda locus on chromosome 22.
Nucleotide Protein
Heading Accession and Version

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