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Cop1 COP1, E3 ubiquitin ligase [ Mus musculus (house mouse) ]

Gene ID: 26374, updated on 5-Nov-2024

Summary

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Official Symbol
Cop1provided by MGI
Official Full Name
COP1, E3 ubiquitin ligaseprovided by MGI
Primary source
MGI:MGI:1347046
See related
Ensembl:ENSMUSG00000040782 AllianceGenome:MGI:1347046
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rfwd2
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and response to ionizing radiation. Predicted to be located in Golgi membrane. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Is expressed in several structures, including central nervous system; genitourinary system; limb; and liver. Orthologous to human COP1 (COP1 E3 ubiquitin ligase). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E14 (RPKM 4.0), whole brain E14.5 (RPKM 4.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Cop1 in Genome Data Viewer
Location:
1 H1; 1 69.03 cM
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (159059734..159182442)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (159232156..159354872)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930562F17 gene Neighboring gene STARR-positive B cell enhancer ABC_E9187 Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d pseudogene Neighboring gene t-complex protein 11 pseudogene Neighboring gene POU domain, class 5, transcription factor 1, related sequence 1 Neighboring gene STARR-seq mESC enhancer starr_02785 Neighboring gene microRNA 1843b Neighboring gene small Cajal body-specific RNA 3A Neighboring gene STARR-seq mESC enhancer starr_02786 Neighboring gene predicted gene, 31256 Neighboring gene STARR-seq mESC enhancer starr_02787 Neighboring gene STARR-seq mESC enhancer starr_02788 Neighboring gene STARR-seq mESC enhancer starr_02789 Neighboring gene STARR-seq mESC enhancer starr_02790 Neighboring gene tenascin R Neighboring gene STARR-seq mESC enhancer starr_02791 Neighboring gene predicted gene, 31348

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A CRISPR Screen Identifies the E3 Ubiquitin Ligase Rfwd2 as a Negative Regulator of Glucose Uptake in Brown Adipocytes.
    Title: A CRISPR Screen Identifies the E3 Ubiquitin Ligase Rfwd2 as a Negative Regulator of Glucose Uptake in Brown Adipocytes.
  2. E3 ubiquitin ligase COP1 confers neuroprotection in cerebral ischemia/reperfusion injury via regulation of transcription factor C/EBPbeta in microglia.
    Title: E3 ubiquitin ligase COP1 confers neuroprotection in cerebral ischemia/reperfusion injury via regulation of transcription factor C/EBPβ in microglia.
  3. In vivo CRISPR screens identify the E3 ligase Cop1 as a modulator of macrophage infiltration and cancer immunotherapy target.
    Title: In vivo CRISPR screens identify the E3 ligase Cop1 as a modulator of macrophage infiltration and cancer immunotherapy target.
  4. Mechanistically, cryptochromes inactivate Cop1 by interacting with Det1, a subunit of the mammalian CRL4(Cop1) complex that is not present in other CRL4s. Through this interaction, the ability of Cop1 to join the CRL4 complex is inhibited; therefore, its substrates accumulate. Thus, the interaction between cryptochromes and Det1 in mammals mirrors the interaction between cryptochromes and Cop1 in planta.
    Title: Cryptochromes-Mediated Inhibition of the CRL4(Cop1)-Complex Assembly Defines an Evolutionary Conserved Signaling Mechanism.
  5. Lipotoxicity led to up-regulation of COP1 at both the gene and protein levels.
    Title: TRB3 stimulates SIRT1 degradation and induces insulin resistance by lipotoxicity via COP1.
  6. Prenatal inactivation of Rfwd2 gene in the lung epithelium led to a striking halt in branching morphogenesis shortly after secondary branch formation.
    Title: E3 ubiquitin ligase RFWD2 controls lung branching through protein-level regulation of ETV transcription factors.
  7. Study shows that post-translational regulation of the transcription factors ETV1, ETV4, and ETV5 by the ubiquitin ligase COP1 (also called RFWD2) in beta cells is critical for insulin secretion. Mice lacking COP1 in beta cells developed diabetes due to insulin granule docking defects that were fully rescued by genetic deletion of Etv1, Etv4, and Etv5.
    Title: β-Cell Insulin Secretion Requires the Ubiquitin Ligase COP1.
  8. These results indicate that COP1 and Trib1 act as an oncoprotein complex functioning upstream of C/EBPalpha, and its ligase activity is crucial for leukemogenesis.
    Title: COP1 targets C/EBPα for degradation and induces acute myeloid leukemia via Trib1.
  9. COP1 physically interacted with PTP1B and suppressed PTP1B phosphatase activity as well as the association of PTP1B with IRbeta.
    Title: Interaction of constitutive photomorphogenesis 1 protein with protein-tyrosine phosphatase 1B suppresses protein-tyrosine phosphatase 1B activity and enhances insulin signaling.
  10. Modulation of fatty acid synthase degradation by concerted action of p38 MAP kinase, E3 ligase COP1, and SH2-tyrosine phosphatase Shp2.
    Title: Modulation of fatty acid synthase degradation by concerted action of p38 MAP kinase, E3 ligase COP1, and SH2-tyrosine phosphatase Shp2.
Submit: New GeneRIF Correction See all GeneRIFs (15)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
  
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
  
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in response to ionizing radiation IEA
Inferred from Electronic Annotation
more info
  
involved_in response to ionizing radiation ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of Cul4A-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
  
part_of Cul4A-RING E3 ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane ISO
Inferred from Sequence Orthology
more info
  
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase COP1
Names
E3 ubiquitin-protein ligase RFWD2
RING finger and WD repeat domain protein 2
RING-type E3 ubiquitin transferase RFWD2
constitutive photomorphogenesis protein 1 homolog
constitutive photomorphogenic protein 1
mCOP1
ring finger and WD repeat domain 2
NP_001347807.1
NP_036061.1
XP_006496923.1
XP_030110253.1
XP_030110256.1
XP_030110257.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360878.2 → NP_001347807.1  E3 ubiquitin-protein ligase COP1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC084287, AC113597
    UniProtKB/TrEMBL
    B2RXW4
    Conserved Domains (4) summary
    sd00039
    Location:471 → 508
    7WD40; WD40 repeat [structural motif]
    cd16504
    Location:134 → 179
    RING-HC_COP1; RING finger, HC subclass, found in constitutive photomorphogenesis protein 1 (COP1) and similar proteins
    cl25539
    Location:238 → 729
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl26688
    Location:138 → 230
    DWNN; DWNN domain

  2. NM_001428831.1 → NP_001415760.1  E3 ubiquitin-protein ligase COP1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC084287, AC113597

  3. NM_001428832.1 → NP_001415761.1  E3 ubiquitin-protein ligase COP1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC084287, AC113597

  4. NM_001428833.1 → NP_001415762.1  E3 ubiquitin-protein ligase COP1 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC084287, AC113597

  5. NM_011931.5 → NP_036061.1  E3 ubiquitin-protein ligase COP1 isoform 1

    See identical proteins and their annotated locations for NP_036061.1

    Status: VALIDATED

    Source sequence(s)
    AC084287, AC113597
    Consensus CDS
    CCDS35745.1
    UniProtKB/Swiss-Prot
    Q9R1A8
    UniProtKB/TrEMBL
    B2RXW4
    Related
    ENSMUSP00000076160.6, ENSMUST00000076894.11
    Conserved Domains (3) summary
    cd00200
    Location:423 → 729
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam00097
    Location:138 → 175
    zf-C3HC4; Zinc finger, C3HC4 type (RING finger)
    sd00039
    Location:475 → 512
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    159059734..159182442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254393.2 → XP_030110253.1  E3 ubiquitin-protein ligase COP1 isoform X1

    Conserved Domains (2) summary
    PLN00181
    Location:3 → 491
    PLN00181; protein SPA1-RELATED; Provisional
    sd00039
    Location:233 → 270
    7WD40; WD40 repeat [structural motif]

  2. XM_030254396.2 → XP_030110256.1  E3 ubiquitin-protein ligase COP1 isoform X2

    Conserved Domains (2) summary
    PLN00181
    Location:56 → 433
    PLN00181; protein SPA1-RELATED; Provisional
    sd00039
    Location:175 → 212
    7WD40; WD40 repeat [structural motif]

  3. XM_006496860.4 → XP_006496923.1  E3 ubiquitin-protein ligase COP1 isoform X1

    Conserved Domains (2) summary
    PLN00181
    Location:3 → 491
    PLN00181; protein SPA1-RELATED; Provisional
    sd00039
    Location:233 → 270
    7WD40; WD40 repeat [structural motif]

  4. XM_030254397.1 → XP_030110257.1  E3 ubiquitin-protein ligase COP1 isoform X2

    Conserved Domains (2) summary
    PLN00181
    Location:56 → 433
    PLN00181; protein SPA1-RELATED; Provisional
    sd00039
    Location:175 → 212
    7WD40; WD40 repeat [structural motif]

RNA

  1. XR_004942526.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9R1A8.2 GenPept UniProtKB/Swiss-Prot:Q9R1A8

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