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E4 1,3 galactose glycoprotein beta1,6 N-acetyl glucosaminyl transferase 1 [ Elephant endotheliotropic herpesvirus 4 ]

Gene ID: 26196520, updated on 4-Jan-2020

Summary

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Gene symbol
E4
Gene description
1,3 galactose glycoprotein beta1,6 N-acetyl glucosaminyl transferase 1
Locus tag
AS018_gp008
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Elephant endotheliotropic herpesvirus 4 (isolate: North American NAP69; Baylor, nat-host: Elephas maximus)
Lineage
Viruses; Herpesvirales; Herpesviridae; Betaherpesvirinae; Proboscivirus; unclassified Proboscivirus
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Genomic context

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Sequence:
NC_028379.1 (13026..14642)

NC_028379.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor-6.3 Neighboring gene G protein-coupled receptor-6.4 Neighboring gene protein E4A Neighboring gene protein E4B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_028379.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Detection and evaluation of novel herpesviruses in routine and pathological samples from Asian and African elephants: identification of two new probosciviruses (EEHV5 and EEHV6) and two new gammaherpesviruses (EGHV3B and EGHV5). Latimer E, et al. Vet Microbiol, 2011 Jan 10. PMID 20579821, Free PMC Article
  2. Comparison of the Gene Coding Contents and Other Unusual Features of the GC-Rich and AT-Rich Branch Probosciviruses. Ling PD, et al. mSphere, 2016 May-Jun. PMID 27340696, Free PMC Article
  3. Complete Genome Sequence of Elephant Endotheliotropic Herpesvirus 4, the First Example of a GC-Rich Branch Proboscivirus. Ling PD, et al. mSphere, 2016 May-Jun. PMID 27340695, Free PMC Article
  4. Comparative genome analysis of four elephant endotheliotropic herpesviruses, EEHV3, EEHV4, EEHV5, and EEHV6, from cases of hemorrhagic disease or viremia. Zong JC, et al. J Virol, 2014 Dec. PMID 25231309, Free PMC Article
  5. Clinico-pathologic features of fatal disease attributed to new variants of endotheliotropic herpesviruses in two Asian elephants (Elephas maximus). Garner MM, et al. Vet Pathol, 2009 Jan. PMID 19112123, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
1,3 galactose glycoprotein beta1,6 N-acetyl glucosaminyl transferase 1
YP_009179238.1
  • vGCNT1; also present in EEHV1A(Kimba), EEHV1A(Raman), EEHV1B(Emelia) and EEHV5(Vijay)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_028379.1 Reference assembly

    Range
    13026..14642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009179238.1 1,3 galactose glycoprotein beta1,6 N-acetyl glucosaminyl transferase 1 [Elephant endotheliotropic herpesvirus 4]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0S1TKJ6
    Conserved Domains (1) summary
    pfam02485
    Location:226 → 496
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
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