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Or8c19-ps1 olfactory receptor family 8 subfamily C member 19, pseudogene1 [ Mus musculus (house mouse) ]

Gene ID: 258473, updated on 26-Oct-2024

Summary

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Official Symbol
Or8c19-ps1provided by MGI
Official Full Name
olfactory receptor family 8 subfamily C member 19, pseudogene1provided by MGI
Primary source
MGI:MGI:3030731
See related
Ensembl:ENSMUSG00000110881 AllianceGenome:MGI:3030731
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MOR170-7; Olfr897-ps1
Summary
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. An allelic polymorphism in this gene results in both coding and non-coding variants; the reference genome represents the non-coding allele. [provided by RefSeq, Apr 2024]
Annotation information
Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
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Genomic context

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See Or8c19-ps1 in Genome Data Viewer
Location:
9 A5.1; 9 20.84 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (38220084..38221027)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (38308788..38309731)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 8 subfamily C member 17 Neighboring gene olfactory receptor family 8 subfamily C member 18 Neighboring gene olfactory receptor family 8 subfamily C member 9 Neighboring gene olfactory receptor family 8 subfamily C member 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The olfactory receptor gene superfamily of the mouse. Zhang X, et al. Nat Neurosci, 2002 Feb. PMID 11802173
  2. Different evolutionary processes shaped the mouse and human olfactory receptor gene families. Young JM, et al. Hum Mol Genet, 2002 Mar 1. PMID 11875048
  3. Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Young JM, et al. Genome Biol, 2003. PMID 14611657, Free PMC Article
  4. A unified nomenclature for vertebrate olfactory receptors. Olender T, et al. BMC Evol Biol, 2020 Apr 15. PMID 32295537, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
olfactory receptor family 8 subfamily C member 19, pseudogene1
Names
GA_x6K02T2PVTD-31999710-32000653
olfactory receptor 897, pseudogene1
olfactory receptor MOR170-7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001429847.1 → NP_001416776.1  olfactory receptor family 8 subfamily C member 19, pseudogene1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (coding) represents the functional allele that is not present in some strains, including the strain of the reference genome.
    Source sequence(s)
    OW971793

RNA

  1. NR_190816.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (non-coding) has an indel that introduces a frameshift and premature stop codon. It represents the non-functional allele present in some strains, including the strain of the reference genome.
    Source sequence(s)
    AC069563

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    38220084..38221027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_003235.2: Suppressed sequence

    Description
    NG_003235.2: This RefSeq was removed by NCBI staff.

  2. NM_146480.1: Suppressed sequence

    Description
    NM_146480.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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