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Or10d5j olfactory receptor family 10 subfamily D member 5J [ Mus musculus (house mouse) ]

Gene ID: 258364, updated on 2-Nov-2024

Summary

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Official Symbol
Or10d5jprovided by MGI
Official Full Name
olfactory receptor family 10 subfamily D member 5Jprovided by MGI
Primary source
MGI:MGI:3030810
See related
Ensembl:ENSMUSG00000047352 AllianceGenome:MGI:3030810
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Olfr976; MOR224-10
Summary
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Or10d5j in Genome Data Viewer
Location:
9 A5.1; 9 21.23 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (39865553..39872340, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (39954257..39961044, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 8 subfamily D member 6 Neighboring gene olfactory receptor family 10 subfamily D member 5 Neighboring gene STARR-seq mESC enhancer starr_23841 Neighboring gene olfactory receptor family 10 subfamily D member 5B, pseudogene 1 Neighboring gene olfactory receptor family 10 subfamily G member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The olfactory receptor gene superfamily of the mouse. Zhang X, et al. Nat Neurosci, 2002 Feb. PMID 11802173
  2. Different evolutionary processes shaped the mouse and human olfactory receptor gene families. Young JM, et al. Hum Mol Genet, 2002 Mar 1. PMID 11875048
  3. Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Young JM, et al. Genome Biol, 2003. PMID 14611657, Free PMC Article
  4. A unified nomenclature for vertebrate olfactory receptors. Olender T, et al. BMC Evol Biol, 2020 Apr 15. PMID 32295537, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables olfactory receptor activity ISA
Inferred from Sequence Alignment
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway ISA
Inferred from Sequence Alignment
more info
 PubMed 
involved_in detection of chemical stimulus involved in sensory perception of smell IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within sensory perception of smell ISA
Inferred from Sequence Alignment
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane ISA
Inferred from Sequence Alignment
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
olfactory receptor 976
Names
GA_x6K02T2PVTD-33657378-33656440
olfactory receptor MOR224-10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360353.1 → NP_001347282.1  olfactory receptor 976 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC159246
    Consensus CDS
    CCDS90535.1
    UniProtKB/TrEMBL
    Q3UX31, Q7TRA5
    Related
    ENSMUSP00000150077.2, ENSMUST00000213171.2
    Conserved Domains (1) summary
    cd15228
    Location:25 → 299
    7tmA_OR10D-like; olfactory receptor subfamily 10D and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors

  2. NM_146367.2 → NP_666479.1  olfactory receptor 976 isoform 2

    See identical proteins and their annotated locations for NP_666479.1

    Status: VALIDATED

    Source sequence(s)
    AC159246
    Consensus CDS
    CCDS23068.1
    UniProtKB/TrEMBL
    Q7TRA5, Q8VF15
    Related
    ENSMUSP00000133083.3, ENSMUST00000169307.3
    Conserved Domains (2) summary
    pfam00001
    Location:53 → 300
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:43 → 317
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    39865553..39872340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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