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H2AZ1-DT H2AZ1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 256880, updated on 10-Oct-2023

Summary

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Official Symbol
H2AZ1-DTprovided by HGNC
Official Full Name
H2AZ1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:40271
See related
AllianceGenome:HGNC:40271
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.4), brain (RPKM 0.1) and 3 other tissues See more
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Genomic context

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Location:
4q23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (99950494..100037705)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (103265978..103353188)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (100871651..100958862)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B14 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21742 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15584 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:100870086-100870691 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15585 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15586 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:100871297-100871901 Neighboring gene H2A.Z variant histone 1 Neighboring gene RPL7L1 pseudogene 14 Neighboring gene dynein light chain LC8-type 1 pseudogene 6 Neighboring gene uncharacterized LOC107986232

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125923.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097460

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    99950494..100037705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    103265978..103353188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_002799.1: Suppressed sequence

    Description
    NR_002799.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
Nucleotide Protein
Heading Accession and Version

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