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LOC25493984 class V chitinase CHIT5b-like [ Medicago truncatula (barrel medic) ]

Gene ID: 25493984, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25493984
Gene description
class V chitinase CHIT5b-like
Locus tag
MtrunA17_Chr4g0065511
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
Also known as
CHIT5b; MtCHIT5b
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Genomic context

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See LOC25493984 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (56598336..56600235, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (48460105..48462011, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene DCN1-like protein 4 Neighboring gene nod factor hydrolase protein 1-like Neighboring gene cysteine-rich receptor-like protein kinase 10 Neighboring gene cysteine-rich receptor-like protein kinase 19 Neighboring gene uncharacterized LOC120580049

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
class V chitinase CHIT5b
Names
Class V chitinase CHIT5b
class V chitinase b protein
glycoside hydrolase family 18 protein
putative glycoside hydrolase family 18, catalytic domain, glycoside hydrolase superfamily

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    56598336..56600235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013602692.3 → XP_013458146.1  class V chitinase CHIT5b

    UniProtKB/Swiss-Prot
    A0A072UR65, A0A1B1J8W5
    Conserved Domains (1) summary
    cd02879
    Location:33 → 367
    GH18_plant_chitinase_class_V; The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A072UR65.1 GenPept UniProtKB/Swiss-Prot:A0A072UR65

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