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LOC25493791 hydroxyproline O-galactosyltransferase GALT5 [ Medicago truncatula (barrel medic) ]

Gene ID: 25493791, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25493791
Gene description
hydroxyproline O-galactosyltransferase GALT5
Locus tag
MtrunA17_Chr4g0059801
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25493791 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (52372263..52376672)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (44383898..44388297)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene mitochondrial inner membrane protein OXA1 Neighboring gene uncharacterized LOC25493790 Neighboring gene AAA-ATPase ASD, mitochondrial Neighboring gene DDT domain-containing protein DDR4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT5
Names
beta-1,3-galactosyltransferase-like protein
putative galactosylxylosylprotein 3-beta-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    52372263..52376672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013602401.3 → XP_013457855.1  hydroxyproline O-galactosyltransferase GALT5

    UniProtKB/TrEMBL
    A0A072URC6
    Conserved Domains (1) summary
    PLN03133
    Location:94 → 615
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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