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LOC25493390 probable starch synthase 4, chloroplastic/amyloplastic [ Medicago truncatula (barrel medic) ]

Gene ID: 25493390, updated on 18-Sep-2024

Summary

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Gene symbol
LOC25493390
Gene description
probable starch synthase 4, chloroplastic/amyloplastic
Locus tag
MtrunA17_Chr4g0051911
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25493390 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (46228161..46237062)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (38325407..38334284)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene protein REDUCED WALL ACETYLATION 3 Neighboring gene pentatricopeptide repeat-containing protein At3g14730 Neighboring gene 40S ribosomal protein S15a-1 Neighboring gene sm-like protein LSM5 Neighboring gene metal transporter Nramp5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable starch synthase 4, chloroplastic/amyloplastic
Names
putative starch synthase
starch synthase IV

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    46228161..46237062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024782086.2 → XP_024637854.2  probable starch synthase 4, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A072UNK6, A0A396IB54
    Conserved Domains (1) summary
    PLN02939
    Location:1 → 979
    PLN02939; transferase, transferring glycosyl groups
Nucleotide Protein
Heading Accession and Version

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