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LOC25485480 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 [ Medicago truncatula (barrel medic) ]

Gene ID: 25485480, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25485480
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
Locus tag
MtrunA17_Chr1g0209251
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25485480 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (53271270..53275468, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (49581063..49585305, complement)

Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene receptor protein kinase-like protein ZAR1 Neighboring gene uncharacterized LOC25485478 Neighboring gene reticulon-like protein B14 Neighboring gene uncharacterized LOC25485483

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aging in legume symbiosis. A molecular view on nodule senescence in Medicago truncatula. Van de Velde W, et al. Plant Physiol, 2006 Jun. PMID 16648219, Free PMC Article
  2. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  3. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
Names
putative alpha,alpha-trehalose-phosphate synthase (UDP-forming), Trehalose-phosphatase
trehalose-6-phosphate synthase domain protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    53271270..53275468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039830018.1 → XP_039685952.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A072VRW8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_024771637.2 → XP_024627405.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A072VRW8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. XM_013614701.3 → XP_013470155.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A072VRW8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  4. XM_024771633.2 → XP_024627401.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A072VRW8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  5. XM_024771642.2 → XP_024627410.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A072VRW8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  6. XM_039830019.1 → XP_039685953.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A072VRW8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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