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LOC25482509 dynein light chain 1, cytoplasmic [ Medicago truncatula (barrel medic) ]

Gene ID: 25482509, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25482509
Gene description
dynein light chain 1, cytoplasmic
Locus tag
MtrunA17_Chr1g0160981
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25482509 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (11296614..11299313)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (11198737..11201396)

Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC25482506 Neighboring gene transcriptional elongation regulator MINIYO Neighboring gene 50S ribosomal protein L15 Neighboring gene glucan endo-1,3-beta-glucosidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dynein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dynein light chain 1, cytoplasmic; dynein light chain
Names
dynein light chain type 1 family protein
putative dynein ATPase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    11296614..11299313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039833944.1 → XP_039689878.1  dynein light chain isoform X2

    UniProtKB/TrEMBL
    A0A396JIF5
    Conserved Domains (1) summary
    cl03131
    Location:1 → 110
    Dynein_light; Dynein light chain type 1

  2. XM_013611081.3 → XP_013466535.1  dynein light chain 1, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    I3S6W8
    Conserved Domains (1) summary
    cl03131
    Location:1 → 146
    Dynein_light; Dynein light chain type 1
Nucleotide Protein
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