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LOC25482111 arabinosyltransferase RRA3 [ Medicago truncatula (barrel medic) ]

Gene ID: 25482111, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25482111
Gene description
arabinosyltransferase RRA3
Locus tag
MtrunA17_Chr1g0154701
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25482111 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (6831448..6834263, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (6772822..6775647, complement)

Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene lysophospholipid acyltransferase LPEAT1 Neighboring gene deSI-like protein At4g17486 Neighboring gene probable protein phosphatase 2C 55 Neighboring gene cytochrome P450 734A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in root hair cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinosyltransferase RRA3
Names
nucleotide-diphospho-sugar transferase family protein
putative nucleotide-diphospho-sugar transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    6831448..6834263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013610612.3 → XP_013466066.1  arabinosyltransferase RRA3

    UniProtKB/TrEMBL
    A0A072VPP4
    Conserved Domains (1) summary
    pfam03407
    Location:183 → 405
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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