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LOC25481395 DNA topoisomerase 2 [ Medicago truncatula (barrel medic) ]

Gene ID: 25481395, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25481395
Gene description
DNA topoisomerase 2
Locus tag
MtrunA17_Chr8g0356341
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25481395 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (17950555..17955560)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) Unplaced Scaffold NW_013656794.1 (89..4741, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene metacaspase-5 Neighboring gene protein FORGETTER 1 Neighboring gene E3 ubiquitin-protein ligase RGLG4 Neighboring gene RING finger protein B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA topological change IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sister chromatid segregation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA topoisomerase 2
Names
DNA topoisomerase IV
putative DNA topoisomerase (ATP-hydrolyzing)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    17950555..17955560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039829026.1 → XP_039684960.1  DNA topoisomerase 2

    Conserved Domains (1) summary
    PLN03237
    Location:26 → 721
    PLN03237; DNA topoisomerase 2; Provisional
Nucleotide Protein Strain
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